Browse Element(s) Details


OsAffx.14846.1.S1_at

Description tigr:9633.m02480
TID=OsAffx.14846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2730411/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27240OsAffx.27037.1.S1_at11/115+15763269..15763730hypothetical protein
LOC_Os05g27250NANA5+15768860..15769782hypothetical protein
LOC_Os05g27260OsAffx.21779.1.S1_at11/115+15771681..15773482retrotransposon protein, putative, unclassified
LOC_Os05g27260OsAffx.21779.3.S1_at2/115+15771681..15773482retrotransposon protein, putative, unclassified
LOC_Os05g27270NANA5+15774254..15776460retrotransposon protein, putative, unclassified
LOC_Os05g27280NANA5+15777089..15779975retrotransposon protein, putative, unclassified
LOC_Os05g27290NANA5+15783604..15784166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27304OsAffx.14846.1.S1_at11/115+15788413..15795503POT family protein, expressed
LOC_Os05g27304OsAffx.4441.1.S1_at10/115+15788413..15795503POT family protein, expressed
LOC_Os05g27320OsAffx.27039.1.S1_at11/115+15795989..15802290VHS domain containing protein, expressed
LOC_Os05g27340Os.23655.1.A1_at11/115+15810616..15812343expressed protein
LOC_Os05g27350Os.56345.1.S1_at9/115+15816894..15818029hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14846.1.S1_at--1081--4991Chr05:15795068..15795092 (25 bp)
GCAGGTGACGCTCTACTACCAGGAG
LOC_Os05g27304
OsAffx.14846.1.S1_at--847--7751Chr05:15795071..15795095 (25 bp)
GGTGACGCTCTACTACCAGGAGTTC
LOC_Os05g27304
OsAffx.14846.1.S1_at--47--5811Chr05:15795074..15795098 (25 bp)
GACGCTCTACTACCAGGAGTTCCCG
LOC_Os05g27304
OsAffx.14846.1.S1_at--532--3231Chr05:15795107..15795131 (25 bp)
CAAGAACACGGCGTCGGGCATGGTC
LOC_Os05g27304
OsAffx.14846.1.S1_at--293--9331Chr05:15795130..15795154 (25 bp)
TCGCCATGATCGTCGCGCTCGGGTT
LOC_Os05g27304
OsAffx.14846.1.S1_at--639--691Chr05:15795135..15795159 (25 bp)
ATGATCGTCGCGCTCGGGTTCTACC
LOC_Os05g27304
OsAffx.14846.1.S1_at--579--7231Chr05:15795141..15795165 (25 bp)
GTCGCGCTCGGGTTCTACCTCAGCA
LOC_Os05g27304
OsAffx.14846.1.S1_at--286--4671Chr05:15795198..15795222 (25 bp)
GCGTGGCTGCCGGACAACATGAACG
LOC_Os05g27304
OsAffx.14846.1.S1_at--335--8311Chr05:15795202..15795226 (25 bp)
GGCTGCCGGACAACATGAACGCCTC
LOC_Os05g27304
OsAffx.14846.1.S1_at--437--10431Chr05:15795444..15795468 (25 bp)
TTATCGGTAGTGTATTTCCATCTTC
LOC_Os05g27304
OsAffx.14846.1.S1_at--527--3971Chr05:15795448..15795472 (25 bp)
CGGTAGTGTATTTCCATCTTCTTCG
LOC_Os05g27304
Target Sequence 
GCAGGTGACGCTCTACTACCAGGAGTTCCCGCCGTCGCTCAAGAACACGGCGTCGGGCATGGTCGCCATGATCGTCGCGC
TCGGGTTCTACCTCAGCACGGCGCTCGTCGACGCCGTGCGCCGCGCCACCGCGTGGCTGCCGGACAACATGAACGCCTCC
AGGCTGGAGAACCTCTACTGGCTGCTCGCCGTGCTCGTCGCCATCAACTTTGGGTACTACCTCGCGTGCGCCAAGCTCTA
CAAGTACCAGAACTTCGGCAAGTAGACACAGCCATGGCTGCCATGACCATGAACATCTTCAGAGCTCTGTACATTACAAA
ATAAACTGCTGACATGATCAAGATCATACTATCACAGAGGTTGTGTGATCAATGTATTATCGGTAGTGTATTTCCATCTT
CTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis