Browse Element(s) Details


Os.23671.1.S1_at

Description gb:AK108569.1
DB_XREF= gi:32993778
TID=Os.23671.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.21 (P0046E05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D03, full insert sequence.
FL= gb:AK108569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5481011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein
LOC_Os01g54800Os.16805.1.S1_x_at1/111+31848070..31848522hypothetical protein
LOC_Os01g54810Os.23671.1.S1_at11/111+31850897..31853962expressed protein
LOC_Os01g54820NANA1+31856613..31859835hypothetical protein
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23671.1.S1_at--254--5711Chr01:31851457..31851481 (25 bp)
GACTACATCTGCTGTCACTACAATG
LOC_Os01g54810
Os.23671.1.S1_at--515--3371Chr01:31851401..31851425 (25 bp)
CACCACTGATGGTGCTTCAGATGAG
LOC_Os01g54810
Os.23671.1.S1_at--736--3891Chr01:31851345..31851369 (25 bp)
CTGGTGATGTGGTCGCGAAGCTTTT
LOC_Os01g54810
Os.23671.1.S1_at--874--1451Chr01:31851300..31851324 (25 bp)
AGAAGTTTCTTGAAGCGCATGGGCT
LOC_Os01g54810
Os.23671.1.S1_at--525--931Chr01:31851211..31851235 (25 bp)
AGGCAGTTGAAGTCCCTCTACACAG
LOC_Os01g54810
Os.23671.1.S1_at--740--2551Chr01:31851153..31851177 (25 bp)
AACTGCTGAGATCGCTGTTTCAACT
LOC_Os01g54810
Os.23671.1.S1_at--683--531Chr01:31851143..31851167 (25 bp)
ATCGCTGTTTCAACTGGCGTTAGAA
LOC_Os01g54810
Os.23671.1.S1_at--625--2011Chr01:31851116..31851140 (25 bp)
ACTCTTTCTAATCAGTTTCTGCCTC
LOC_Os01g54810
Os.23671.1.S1_at--1005--9591Chr01:31851074..31851098 (25 bp)
TCATCATGGTTGTGACTGTGAACTA
LOC_Os01g54810
Os.23671.1.S1_at--939--3511Chr01:31850994..31851018 (25 bp)
CATGTTCCATCTTCTGTCAGAGGTT
LOC_Os01g54810
Os.23671.1.S1_at--18--6931Chr01:31850928..31850952 (25 bp)
GTATGTCTGGATACCGATTAGCATC
LOC_Os01g54810
Target Sequence 
GACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGA
GCAGCNGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCNAAAGGCCCACAGA
AGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTT
ATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCT
GTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACNTGATATGTTTCATCATGGTTGTGACT
GTGAACTATNNTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCT
GTCAGAGGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACCGATTAGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis