Browse Element(s) Details


Os.26431.1.A1_a_at

Description gb:AK068036.1
DB_XREF= gi:32978054
TID=Os.26431.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.19 (P0046E05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129G23, full insert sequence.
FL= gb:AK068036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5478411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein
LOC_Os01g54800Os.16805.1.S1_x_at1/111+31848070..31848522hypothetical protein
LOC_Os01g54810Os.23671.1.S1_at11/111+31850897..31853962expressed protein
LOC_Os01g54820NANA1+31856613..31859835hypothetical protein
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26431.1.A1_a_at--1078--9531Chr01:31845755..31845779 (25 bp)
TCTATGGGTCATGAAAGATATTCCT
LOC_Os01g54784
Os.26431.1.A1_a_at--211--5571Chr01:31845767..31845791 (25 bp)
GAAAGATATTCCTCATCGGCAGACA
LOC_Os01g54784
Os.26431.1.A1_a_at--34--6531Chr01:31845771..31845795 (25 bp)
GATATTCCTCATCGGCAGACAGTAG
LOC_Os01g54784
Os.26431.1.A1_a_at--431--91Chr01:31845774..31845798 (25 bp)
ATTCCTCATCGGCAGACAGTAGAAA
LOC_Os01g54784
Os.26431.1.A1_a_at--575--8251Chr01:31845784..31845808 (25 bp)
GGCAGACAGTAGAAAGGCCCACACA
LOC_Os01g54784
Os.26431.1.A1_a_at--684--6791Chr01:31845819..31845843 (25 bp)
GTTATTTTGTTCAGGGATAGACCAT
LOC_Os01g54784
Os.26431.1.A1_a_at--875--7651Chr01:31845832..31845856 (25 bp)
GGGATAGACCATCCCCTACACAGGA
LOC_Os01g54784
Os.26431.1.A1_a_at--115--6371Chr01:31845855..31845879 (25 bp)
GATCCACAATGGAGGACTGCCGTTA
LOC_Os01g54784
Os.26431.1.A1_a_at--1108--3291Chr01:31845859..31845883 (25 bp)
CACAATGGAGGACTGCCGTTACATC
LOC_Os01g54784
Os.26431.1.A1_a_at--1048--8011Chr01:31845865..31845889 (25 bp)
GGAGGACTGCCGTTACATCCTCTAA
LOC_Os01g54784
Os.26431.1.A1_a_at--516--1951Chr01:31845870..31845894 (25 bp)
ACTGCCGTTACATCCTCTAACAAGG
LOC_Os01g54784
Target Sequence 
TCTATGGGTCATGAAAGATATTCCTCATCGGCAGACAGTAGAAAGGCCCACACAATCAAGAGTTGTTATTTTGTTCAGGG
ATAGACCATCCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26431.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis