Browse Element(s) Details


OsAffx.21756.4.S1_x_at

Description gb:NM_191462.1
DB_XREF= gi:34910007
GEN=P0413G02.5
TID=OsAffx.21756.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0413G02.5 (P0413G02.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g547401/11transposon protein, putative, unclassified
LOC_Os02g351201/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein
LOC_Os01g54800Os.16805.1.S1_x_at1/111+31848070..31848522hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21756.4.S1_x_at--961--9893Chr01:33153617..33153641 (25 bp)
TACTCAACCTGGTCGGTCTGACCAC
NONE
OsAffx.21756.4.S1_x_at--566--2332Chr01:33153737..33153761 (25 bp)
AAACCAGACCTGTGGGGCCGGTCAG
NONE
OsAffx.21756.4.S1_x_at--935--9751Chr01:33153769..33153793 (25 bp)
TAAGGCCCACGGTCATACCGCAATT
NONE
OsAffx.21756.4.S1_x_at--476--1911Chr01:33153777..33153801 (25 bp)
ACGGTCATACCGCAATTCACTTTTC
NONE
OsAffx.21756.4.S1_x_at--832--7811Chr01:33153779..33153803 (25 bp)
GGTCATACCGCAATTCACTTTTCAG
NONE
OsAffx.21756.4.S1_x_at--913--9591Chr01:33153781..33153805 (25 bp)
TCATACCGCAATTCACTTTTCAGCT
NONE
OsAffx.21756.4.S1_x_at--838--311Chr01:33153783..33153807 (25 bp)
ATACCGCAATTCACTTTTCAGCTCA
NONE
OsAffx.21756.4.S1_x_at--243--28726Chr11:18955410..18955434 (25 bp)
AAGGGCTATCCAACCCATGAACAAT
NONE
OsAffx.21756.4.S1_x_at--117--48522Chr08:19911285..19911309 (25 bp)
GCTATCCAACCCATGAACAATCCAT
NONE
OsAffx.21756.4.S1_x_at--903--5534Chr01:33153923..33153947 (25 bp)
GAAACACAAATTTTCTCAGGGAGAA
NONE
OsAffx.21756.4.S1_x_at--1068--716Chr08:1692599..1692622 (24 bp)
ATTTTCTCAGGGAGAAAGGGCTCAC
NONE
Target Sequence 
TACTCAACCTGGTCGGTCTGACCACAGTGTAGTGGCCGGTCAGACCGTCCACGGCTCGGTCAGACCGCCGTCGGCTCGGT
CTGACTGGTTGCGGCTCTGGCGGCTCTGTATCGCCACCAAAAACCAGACCTGTGGGGCCGGTCAGACCGGCCTAAGGCCC
ACGGTCATACCGCAATTCACTTTTCAGCTCAACCGACCGTTAGTAAAACGACGATATCTCTTGACTCGGGTCTCGGAATT
TGGCGTTCTTGGACTTTATGGAAAGCTTATTCAAAGGGCTATCCAACCCATGAACAATCCATCCAAGAAACACAAATTTT
CTCAGGGAGAAAGGGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21756.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis