Browse Element(s) Details


Os.32801.1.S1_x_at

Description gb:NM_191238.1
DB_XREF= gi:34909559
GEN=P0046E05.12
TID=Os.32801.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32801 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor protein kinase (P0046E05.12), mRNA.
PROD=putative receptor protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5470011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54660OsAffx.22492.1.S1_x_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54670Os.32455.1.S1_at11/111+31780183..31784396expressed protein
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32801.1.S1_x_at--1151--9111Chr01:31802284..31802308 (25 bp)
TGCTGGACTACACCTTCGAACCAAA
LOC_Os01g54700
Os.32801.1.S1_x_at--1128--7911Chr01:31802165..31802189 (25 bp)
GGTTGGCCAAGTACCAAGCCACTGA
LOC_Os01g54700
Os.32801.1.S1_x_at--594--2651Chr01:31802150..31802174 (25 bp)
AAGCCACTGAGCAGACCGCTGTTTC
LOC_Os01g54700
Os.32801.1.S1_x_at--836--10591Chr01:31802128..31802152 (25 bp)
TTCGACGCGCGTAATGGGAACTTTT
LOC_Os01g54700
Os.32801.1.S1_x_at--950--10451Chr01:31801977..31802001 (25 bp)
TTAGCTCCAGAGTATGCTGCCACGG
LOC_Os01g54700
Os.32801.1.S1_x_at--849--9591Chr01:31801923..31801947 (25 bp)
TCATTCGGCGTGATGCTCCTGGAGC
LOC_Os01g54700
Os.32801.1.S1_x_at--810--5411Chr01:31801885..31801909 (25 bp)
GAAGCCTATCATGGTGTCTCACGGT
LOC_Os01g54700
Os.32801.1.S1_x_at--606--5631Chr01:31801762..31801875 (25 bp)
GACACATTGGTTTCTTGGGCGAGAC
LOC_Os01g54700
Os.32801.1.S1_x_at--557--4071Chr01:31801743..31801767 (25 bp)
CGAGACCCCTGCTGGTGAGAGCTGT
LOC_Os01g54700
Os.32801.1.S1_x_at--176--8351Chr01:31801683..31801707 (25 bp)
GGCTGGAGAACAACTACGACGCGTA
LOC_Os01g54700
Os.32801.1.S1_x_at--491--1851Chr01:31801365..31801389 (25 bp)
ACGACGGACCAGATGAAGCGGCTCA
LOC_Os01g54700
Target Sequence 
TGCTGGACTACACCTTCGAACCAAAGGTTGCAGATTTTGGGTTGGCCAAGTACCAAGCCACTGAGCAGACCGCTGTTTCG
ACGCGCGTAATGGGAACTTTTGGATATTTAGCTCCAGAGTATGCTGCCACGGGCAAAGTGAACGACCGTTCCGACGTCTT
CTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACAT
TGGTTTCTTGGGCGAGACCCCTGCTGGTGAGAGCTGTGGAGGAGGAGAACTTCGAGGAGCTGGTTGACCCGAGGCTGGAG
AACAACTACGACGCGTACGACATGGGGCGGCTGATCGCCTGCGCGGCCGCCGCCGTGCGCCACACCGCGCGGTCTCGCCC
GCGGATGAGCCAGGCCCGGGCAGAGCGCGATGCAGCGGACGAGCGGCGGCACGACGGACCAGATGAAGCGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32801.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis