Browse Element(s) Details


Os.51954.1.S1_at

Description gb:AK102832.1
DB_XREF= gi:32988041
TID=Os.51954.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109I17, full insert sequence.
FL= gb:AK102832.1 gb:AK064397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5470011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54660OsAffx.22492.1.S1_x_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54670Os.32455.1.S1_at11/111+31780183..31784396expressed protein
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51954.1.S1_at--1085--3371Chr01:31801276..31801300 (25 bp)
CAGCGAGCCAACTAGCGAGTACGGG
LOC_Os01g54700
Os.51954.1.S1_at--448--1431Chr01:31801134..31801158 (25 bp)
AGCAGGCGGACCACCGCTAGACGTG
LOC_Os01g54700
Os.51954.1.S1_at--316--8691Chr01:31801100..31801124 (25 bp)
TGTGACAGTGCGACACCGGAATTTC
LOC_Os01g54700
Os.51954.1.S1_at--1056--4591Chr01:31801062..31801086 (25 bp)
GCGAGCCCGGCGACTTTTAGCCGTA
LOC_Os01g54700
Os.51954.1.S1_at--327--5691Chr01:31801051..31801075 (25 bp)
GACTTTTAGCCGTACGTGATCGTCA
LOC_Os01g54700
Os.51954.1.S1_at--1031--4231Chr01:31801042..31801066 (25 bp)
CCGTACGTGATCGTCAAGGTTGCGA
LOC_Os01g54700
Os.51954.1.S1_at--750--10191Chr01:31800987..31801011 (25 bp)
TATATACACGTAATGCTGTCACTGT
LOC_Os01g54700
Os.51954.1.S1_at--1065--10451Chr01:31800959..31800983 (25 bp)
TTAAACTACATTCCAAATCCCGCGG
LOC_Os01g54700
Os.51954.1.S1_at--310--9871Chr01:31800953..31800977 (25 bp)
TACATTCCAAATCCCGCGGTTGTTT
LOC_Os01g54700
Os.51954.1.S1_at--1008--6811Chr01:31800932..31800956 (25 bp)
GTTTCTTTGGTTTTCGAATTCATGC
LOC_Os01g54700
Os.51954.1.S1_at--274--8751Chr01:31800885..31800909 (25 bp)
TGTAAATTGTACCTACCTTCACTAA
LOC_Os01g54700
Target Sequence 
CAGCGAGCCAACTAGCGAGTACGGGCTGAACCCGTCCACCGAGTACACCACCAGCGCAGCCGGCGGCGACACCGGGGAGG
TGACGGTGGACGTGCAGATGACGGCCGGCGCCAGCGGCGAGGCGGCCGGCACGGAGAGGCTGAGCAGGCGGACCACCGCT
AGACGTGGCGGGCGGGTGTGACAGTGCGACACCGGAATTTCGGTGCCCCGCCCGGCGAGCCCGGCGACTTTTAGCCGTAC
GTGATCGTCAAGGTTGCGATCGAATGAATTAAATCATTTTGTTCGTGTATATATACACGTAATGCTGTCACTGTAAATTA
AACTACATTCCAAATCCCGCGGTTGTTTCTTTGGTTTTCGAATTCATGCAATTTTTGTTGGAGTGGAAGTTTGTAAATTG
TACCTACCTTCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis