Browse Element(s) Details


Os.24017.1.S1_at

Description gb:AK108698.1
DB_XREF= gi:32993907
TID=Os.24017.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative potential phospholipid-transporting ATPase 8 (OSJNBb0011E04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G12, full insert sequence.
FL= gb:AK108698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g291508/11Phospholipid-transporting ATPase 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein
LOC_Os08g29150Os.24017.1.S1_at8/118+17711347..17718074Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os08g29160Os.14369.1.A1_a_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29160Os.14369.1.A2_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29170Os.14369.2.S1_at11/118+17722838..17724773Quinone oxidoreductase, putative, expressed
LOC_Os08g29180Os.47463.1.S1_x_at6/118+17738212..17751174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29180Os.14491.2.S1_x_at5/118+17738212..17751174transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24017.1.S1_at--796--6051Chr08:17717499..17717523 (25 bp)
GAGATTGCTATGGTATCCTAACAAC
LOC_Os08g29150
Os.24017.1.S1_at--983--7411Chr08:17717613..17717637 (25 bp)
GTGTACATACTTGAGCTCATACCCA
LOC_Os08g29150
Os.24017.1.S1_at--559--2871Chr08:17717686..17717710 (25 bp)
AAGTGGCTGCTTCGACAGGCTCATT
LOC_Os08g29150
Os.24017.1.S1_at--568--5631Chr08:17717699..17717723 (25 bp)
GACAGGCTCATTGTTTCCATTATAC
LOC_Os08g29150
Os.24017.1.S1_at--256--2231Chr08:17717792..17717816 (25 bp)
AACAAACCCGTGAGTTCACTCTTGG
LOC_Os08g29150
Os.24017.1.S1_at--1131--1211Chr08:17717804..17717828 (25 bp)
AGTTCACTCTTGGTCCTCTGATATG
LOC_Os08g29150
Os.24017.1.S1_at--431--4291Chr08:17717818..17717842 (25 bp)
CCTCTGATATGGCTCGTCCTTTTTT
LOC_Os08g29150
Os.24017.1.S1_at--671--8871NONE
TGAGGCCAAATGCTGTTCTTACGTG
NONE
Os.24017.1.S1_at--745--3011NONE
AATGCTGTTCTTACGTGAGACCAAT
NONE
Os.24017.1.S1_at--358--7391Chr08:17718017..17718040 (24 bp)
GTGAGACCAATCTTTCTTAGCCTGC
LOC_Os08g29150
Os.24017.1.S1_at--1100--10411NONE
TTAGCCTGCCGTTAAGTGGTAAATC
NONE
Target Sequence 
GAGATTGCTATGGTATCCTAACAACTTTACAGTTCAGTTTATAAACCATGATATTTTAGATGGTGAATATAGTATCAAAA
CAAAAATAGCTAGTTAATGNGTTAGAGTTAGATTGTGTACATACTTGAGCTCATACCCAAAAAATTAGNGTCGGGCTATA
GTGTTGCATGAGTTGATATGGGAATGGAAGTGGCTGCTTCGACAGGCTCATTGTTTCCATTATACTGGTAAAGTACAGTT
GCNTNNGNGGGGAACTTGTGTTTTNGGACACAAGGCTGATNTTNTTNCTGNTCAACAAACCCGTGAGTTCACTCTTGGTC
CTCTGATATGGCTCGTCCTTTTTTTTTTGTTTATTAGTAATCATGNTTGTAATTTGGTTGCCAGGAGGGATGAGATCTGT
NGGCTNGTGCTTTGTACAGCCGAATNAGATGTTTATNCCCCCTTTTATGCACCATCATTGTAATTAAGTTTAAGCAGATA
ATGTTGGCGTTTTTTTGTGAGGCCAAATGCTGTTCTTACGTGAGACCAATCTTTCTTAGCCTGCCGTTAAGTGGTAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis