Browse Element(s) Details


Os.24080.1.A1_at

Description gb:AK101233.1
DB_XREF= gi:32986442
TID=Os.24080.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031J21, full insert sequence.
FL= gb:AK101233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0665011/11expressed protein
LOC_Os05g065401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06600OsAffx.26762.1.S1_at11/115+3386486..3388890hypothetical protein
LOC_Os05g06600OsAffx.8723.1.S1_at2/115+3386486..3388890hypothetical protein
LOC_Os05g06600Os.54405.1.S1_at1/115+3386486..3388890hypothetical protein
LOC_Os05g06610NANA5+3389850..3394296retrotransposon protein, putative, unclassified
LOC_Os05g06620Os.7307.3.S1_x_at1/115+3398518..3400491retrotransposon protein, putative, unclassified
LOC_Os05g06630Os.38041.1.S1_at11/115+3402684..3406845expressed protein
LOC_Os05g06630Os.38041.1.S2_at10/115+3402684..3406845expressed protein
LOC_Os05g06630Os.24178.1.A1_x_at2/115+3402684..3406845expressed protein
LOC_Os05g06640NANA5+3409036..3411131retrotransposon protein, putative, unclassified
LOC_Os05g06650Os.24080.1.A1_at11/115+3412487..3416256expressed protein
LOC_Os05g06660Os.18819.1.S1_at11/115+3417229..3421788Serine carboxypeptidase II precursor, putative, expressed
LOC_Os05g06670Os.1814.1.S1_a_at11/115+3437635..3443885oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24080.1.A1_at--1082--5311Chr05:3415513..3415537 (25 bp)
GAAGGTGGCTTTATTGTTGAACACA
LOC_Os05g06650
Os.24080.1.A1_at--768--3311Chr05:3415534..3415558 (25 bp)
CACATAGCCAATGATTCTGCTCTTG
LOC_Os05g06650
Os.24080.1.A1_at--114--9491Chr05:3415549..3415573 (25 bp)
TCTGCTCTTGAAAATCTCGGTGTTA
LOC_Os05g06650
Os.24080.1.A1_at--209--7291Chr05:3415605..3415626 (22 bp)
GTGCGGGACTATGTTGCCTGAGATA
LOC_Os05g06650
Os.24080.1.A1_at--230--9251Chr05:3415728..3415752 (25 bp)
TCCTTCATCTTGGTCGGAGATACCT
LOC_Os05g06650
Os.24080.1.A1_at--605--5172Chr05:3415898..3415922 (25 bp)
GCAAGGAGACAATTACCTTACCCTT
LOC_Os05g06650
Os.24080.1.A1_at--249--9951Chr05:3415916..3415940 (25 bp)
TACCCTTAGAATTTAAAGTCAGCTC
LOC_Os05g06650
Os.24080.1.A1_at--906--2831Chr05:3415931..3416051 (25 bp)
AAGTCAGCTCAGGAAAGGTTGCCTG
LOC_Os05g06650
Os.24080.1.A1_at--885--7071Chr05:3416121..3416145 (25 bp)
GTAATTCGAGTGTTCTTTGACTTGA
LOC_Os05g06650
Os.24080.1.A1_at--1107--3672Chr05:3416135..3416159 (25 bp)
CTTTGACTTGATGACTTCTGTCGGG
LOC_Os05g06650
Os.24080.1.A1_at--98--8731Chr05:3416219..3416243 (25 bp)
TGTCATATATATTCAGCCCGATTGG
LOC_Os05g06650
Target Sequence 
GAAGGTGGCTTTATTGTTGAACACATAGCCAATGATTCTGCTCTTGAAAATCTCGGTGTTAGACGGGGTGNCGTGATCTT
TTTTGAGGATAAGTGCGGGACTATGTTGCCTGAGATAGAAGATTATNTCCTTCATCTTGGTCGGAGATACCTGGGTGAGA
AGANGTCGATGGTTCTCAAGTTGGAAGTACATGACATTGAAGGTACATGCAAGGAGACAATTACCTTACCCTTAGAATTT
AAAGTCAGCTCAGGAAAGGTTGCCTGACGGAGGATGGCTTGANGATGTACAGCAAGACTGAAGTTACCTGGAGAGGATAA
TTTAGTGAATGTTATGTAATTCGAGTGTTCTTTGACTTGATGACTTCTGTCGGGGCGTTTAACCTAGGATGTTACCTAAT
TTTGGCTGAACTGCTAATANTNATATGAACGACTGTCATATATATTCAGCCCGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24080.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis