Browse Element(s) Details


Os.24713.2.S1_x_at

Description gb:AK059057.1
DB_XREF= gi:32969075
TID=Os.24713.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F06, full insert sequence.
FL= gb:AK059057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3398011/11tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g389301/11tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33950NANA6+19769809..19773453retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33960NANA6+19773719..19774519retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33970OsAffx.4996.1.S1_at11/116+19779937..19780814VQ motif family protein, expressed
LOC_Os06g33980Os.24713.1.S1_at11/116+19782166..19784261tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os06g33980Os.24713.2.S1_x_at11/116+19782166..19784261tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os06g33990OsAffx.15720.1.S1_at10/116+19794311..19795809hypothetical protein
LOC_Os06g34000Os.47463.1.S1_x_at6/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34000Os.14491.2.S1_x_at5/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34010NANA6+19805097..19808191transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006388biological_processtRNA splicing
GO:0000214cellular_componenttRNA-intron endonuclease complex
GO:0000213molecular_functiontRNA-intron endonuclease activity
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24713.2.S1_x_at--1020--8591Chr06:19782953..19782977 (25 bp)
TGGTCTGATCTACTATGTGCACTCC
LOC_Os06g33980
Os.24713.2.S1_x_at--848--1992Chr11:22677111..22677133 (23 bp)
ACTCCGGGCTTCTGGCAGTGTAGCA
LOC_Os11g38930
Os.24713.2.S1_x_at--877--2291Chr06:19782872..19782896 (25 bp)
AAATGTGAACTGAGCTCCCCAGATT
LOC_Os06g33980
Os.24713.2.S1_x_at--919--9891Chr06:19782694..19782718 (25 bp)
TACTAGGCTTCACTGTTCTATCTGG
LOC_Os06g33980
Os.24713.2.S1_x_at--445--3691Chr06:19782677..19782701 (25 bp)
CTATCTGGCTTGCTTGTGTACAGGT
LOC_Os06g33980
Os.24713.2.S1_x_at--389--6071Chr06:19782636..19782660 (25 bp)
GAGTTAACATTTCTGTGCACCTGTG
LOC_Os06g33980
Os.24713.2.S1_x_at--132--1251Chr06:19782577..19782601 (25 bp)
AGTTGTACTCTTTTGTGAGCCTTGC
LOC_Os06g33980
Os.24713.2.S1_x_at--378--1691Chr06:19782560..19782584 (25 bp)
AGCCTTGCTTCTGGTTTCTAGTCTA
LOC_Os06g33980
Os.24713.2.S1_x_at--327--311Chr06:19782519..19782543 (25 bp)
ATAGCCACGCATCTGACTTGGACAG
LOC_Os06g33980
Os.24713.2.S1_x_at--522--7151Chr06:19782469..19782493 (25 bp)
GTCTTAGATCTTGAATACAGCCCTG
LOC_Os06g33980
Os.24713.2.S1_x_at--1062--2151Chr06:19782453..19782477 (25 bp)
ACAGCCCTGGATTGGCATTTTCAGT
LOC_Os06g33980
Target Sequence 
TGGTCTGATCTACTATGTGCACTCCGGGCTTCTGGCAGTGTAGCAAAGACATTACTGGTTCTGACAATTAGCAGCAGCAG
TAAATGTGAACTGAGCTCCCCAGATTGTTTGGAACAGCTTGTTGTTCACGAGAGAACGATCACAAGATGGATACTGCAGC
AATGCCGTGAACAACGATGTGAACCAAGCAGAGATGAAGTGAATAGGGAAGAACTGATTATTGAAAAGGAAAGTGTAGTA
TTTAATCACTGGGGTGTGATACTAGGCTTCACTGTTCTATCTGGCTTGCTTGTGTACAGGTTGAAATTCAGACAATAGAG
TTAACATTTCTGTGCACCTGTGTTGTTGAGGTGTTAGCTTGGAATTTGAAATCCTGAGTTGTACTCTTTTGTGAGCCTTG
CTTCTGGTTTCTAGTCTAGATATGACAAATAATTATAGCCACGCATCTGACTTGGACAGCAGAGAAACGTTTGAATTTTG
ATCTGTCTTAGATCTTGAATACAGCCCTGGATTGGCATTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24713.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis