Browse Element(s) Details


OsAffx.4996.1.S1_at

Description tigr:9634.m03191
TID=OsAffx.4996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3397011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33950NANA6+19769809..19773453retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33960NANA6+19773719..19774519retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33970OsAffx.4996.1.S1_at11/116+19779937..19780814VQ motif family protein, expressed
LOC_Os06g33980Os.24713.1.S1_at11/116+19782166..19784261tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os06g33980Os.24713.2.S1_x_at11/116+19782166..19784261tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os06g33990OsAffx.15720.1.S1_at10/116+19794311..19795809hypothetical protein
LOC_Os06g34000Os.47463.1.S1_x_at6/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34000Os.14491.2.S1_x_at5/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34010NANA6+19805097..19808191transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4996.1.S1_at--936--1551Chr06:19780103..19780127 (25 bp)
AGCTTCAAGGCCGTCGTGCAGCGGC
LOC_Os06g33970
OsAffx.4996.1.S1_at--171--7331Chr06:19780118..19780142 (25 bp)
GTGCAGCGGCTCACGGGCCAGTCCG
LOC_Os06g33970
OsAffx.4996.1.S1_at--597--7471Chr06:19780492..19780512 (21 bp)
GTGGGCAGTCGTGCCGTGATTGCCA
LOC_Os06g33970
OsAffx.4996.1.S1_at--332--3451Chr06:19780511..19780535 (25 bp)
CAGTCGCCATTGTTGTGCCGATCAA
LOC_Os06g33970
OsAffx.4996.1.S1_at--528--9331Chr06:19780514..19780538 (25 bp)
TCGCCATTGTTGTGCCGATCAACCT
LOC_Os06g33970
OsAffx.4996.1.S1_at--716--10811Chr06:19780523..19780547 (25 bp)
TTGTGCCGATCAACCTGGACGGAGC
LOC_Os06g33970
OsAffx.4996.1.S1_at--740--6451Chr06:19780530..19780554 (25 bp)
GATCAACCTGGACGGAGCTCCTCTG
LOC_Os06g33970
OsAffx.4996.1.S1_at--332--2632Chr06:19780534..19780558 (25 bp)
AACCTGGACGGAGCTCCTCTGATGT
LOC_Os06g33970
OsAffx.4996.1.S1_at--535--3912Chr06:19780537..19780561 (25 bp)
CTGGACGGAGCTCCTCTGATGTAGA
LOC_Os06g33970
OsAffx.4996.1.S1_at--539--5751Chr06:19780540..19780564 (25 bp)
GACGGAGCTCCTCTGATGTAGAGTC
LOC_Os06g33970
OsAffx.4996.1.S1_at--591--3951Chr06:19780542..19780566 (25 bp)
CGGAGCTCCTCTGATGTAGAGTCAG
LOC_Os06g33970
Target Sequence 
AGCTTCAAGGCCGTCGTGCAGCGGCTCACGGGCCAGTCCGCGCCCTCGCCTTCGGCGCCGGCGACCTCGGCGAGGCCGAG
CAGGCCGCGCGCGCGCGCCGCGGTCACGGCTTGCCCGGCGGCCGCCGTGGGCAGTCGTGCCGTGATTGCCAGTCGCCATT
GTTGTGCCGATCAACCTGGACGGAGCTCCTCTGATGTAGAGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis