Browse Element(s) Details


Os.2476.1.S1_at

Description gb:AK067481.1
DB_XREF= gi:32977499
TID=Os.2476.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107H14, full insert sequence.
FL= gb:AK067481.1 gb:AK059567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0111011/1150S ribosomal protein L28, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01120Os.53958.1.S1_at11/115+79445..82191Cytochrome P450 family protein, expressed
LOC_Os05g01130OsAffx.19542.3.S1_x_at7/115+83315..87536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01140Os.14938.1.S1_at11/115+94475..96310SAM dependent carboxyl methyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2476.1.S1_at--804--2891Chr05:75899..75923 (25 bp)
AAGGTGTCCTTCTCAAACCACAAGA
LOC_Os05g01110
Os.2476.1.S1_at--476--5031Chr05:75864..75888 (25 bp)
GCAGTTTGTGAACCTGCAGTACAAG
LOC_Os05g01110
Os.2476.1.S1_at--1009--2351Chr05:75788..75812 (25 bp)
AAAGCCCTCAAGACCATCGAGAAGC
LOC_Os05g01110
Os.2476.1.S1_at--342--751Chr05:75678..75702 (25 bp)
ATGTATTCTCTCATCAATTGCCGCT
LOC_Os05g01110
Os.2476.1.S1_at--103--3171Chr05:75663..75687 (25 bp)
AATTGCCGCTGTGCTGAATAGACCA
LOC_Os05g01110
Os.2476.1.S1_at--663--7011Chr05:75580..75604 (25 bp)
GTACTACAGTATGCATTCATCGGTG
LOC_Os05g01110
Os.2476.1.S1_at--1125--3091Chr05:75531..75555 (25 bp)
AATTTCCTTTTATCCCGTGTTGCTG
LOC_Os05g01110
Os.2476.1.S1_at--8--6691Chr05:75513..75537 (25 bp)
GTTGCTGCTGCAAGTCCGGCTCGAA
LOC_Os05g01110
Os.2476.1.S1_at--1160--9271Chr05:75499..75523 (25 bp)
TCCGGCTCGAATTGTTTGCTACTAG
LOC_Os05g01110
Os.2476.1.S1_at--424--4851Chr05:75482..75506 (25 bp)
GCTACTAGTGTTTCATTTCGGTCGA
LOC_Os05g01110
Os.2476.1.S1_at--5--3571Chr05:75469..75493 (25 bp)
CATTTCGGTCGAGTTCCTAATTAAT
LOC_Os05g01110
Target Sequence 
AAGGTGTCCTTCTCAAACCACAAGACGAAGAAGCAGCAGTTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGAAGG
CAAGCGCTTCGTCAAGCTGCGTCTCTCCACCAAAGCCCTCAAGACCATCGAGAAGCATGGCCTCGACGCCGTCGCCAAAA
AGGCCGGCATCGACCTCAACAAGAAATAAATCAAATCATCATCATCATGATGCATACATACATGTATTCTCTCATCAATT
GCCGCTGTGCTGAATAGACCAGAGCTGTATGTAGTCCATTATTAAATCCATTCATCTCGATGATGCAATTTATTGTAGAG
TACTACAGTATGCATTCATCGGTGGTGGTGGCCGGCTTCGTTTCCTTAAATTTCCTTTTATCCCGTGTTGCTGCTGCAAG
TCCGGCTCGAATTGTTTGCTACTAGTGTTTCATTTCGGTCGAGTTCCTAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis