Browse Element(s) Details


OsAffx.14487.1.S1_at

Description tigr:9633.m00008
TID=OsAffx.14487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0108011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01120Os.53958.1.S1_at11/115+79445..82191Cytochrome P450 family protein, expressed
LOC_Os05g01130OsAffx.19542.3.S1_x_at7/115+83315..87536retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14487.1.S1_at--412--7211Chr05:65859..65883 (25 bp)
GTCGTAGTCGTCCTGCTCGTTGCCA
LOC_Os05g01080
OsAffx.14487.1.S1_at--344--6691Chr05:65841..65865 (25 bp)
GTTGCCAGCGGCTACTTGGAAATCA
LOC_Os05g01080
OsAffx.14487.1.S1_at--534--2071Chr05:65828..65852 (25 bp)
ACTTGGAAATCAAGCGCCGCTGTGG
LOC_Os05g01080
OsAffx.14487.1.S1_at--272--5351Chr05:65712..65736 (25 bp)
GAAGATAGCAACTGCTCCGCATCGG
LOC_Os05g01080
OsAffx.14487.1.S1_at--898--4791Chr05:65699..65723 (25 bp)
GCTCCGCATCGGCATTGGCACAATG
LOC_Os05g01080
OsAffx.14487.1.S1_at--173--31Chr05:65686..65710 (25 bp)
ATTGGCACAATGCAACTCCATCTGC
LOC_Os05g01080
OsAffx.14487.1.S1_at--975--4631Chr05:65649..65673 (25 bp)
GCGTCCACGTTTCGTTCAGGAGGAA
LOC_Os05g01080
OsAffx.14487.1.S1_at--380--2591Chr05:65619..65643 (25 bp)
AACGACGATGATAACCACTCCGACG
LOC_Os05g01080
OsAffx.14487.1.S1_at--724--1891Chr05:65597..65621 (25 bp)
ACGTCTCGACGTCAGAGTCAGATGA
LOC_Os05g01080
OsAffx.14487.1.S1_at--382--5051Chr05:65525..65549 (25 bp)
GCAGAAGCCCCTCGCTATCAGATTG
LOC_Os05g01080
OsAffx.14487.1.S1_at--841--10151Chr05:65510..65534 (25 bp)
TATCAGATTGGCTTGCCCCTTCTTC
LOC_Os05g01080
Target Sequence 
GTCGTAGTCGTCCTGCTCGTTGCCAGCGGCTACTTGGAAATCAAGCGCCGCTGTGGCGCCCTTCCGGCTGCGGCTGATCG
CGCTGCTGCACCACCTCAAGATGATGATACCATGAGTATGATGACCAGGGAGGAGGCAGCAGCACAAGAAGATAGCAACT
GCTCCGCATCGGCATTGGCACAATGCAACTCCATCTGCTGCAGCCTGTCGGCGTCCACGTTTCGTTCAGGAGGAAGCCGC
AACGACGATGATAACCACTCCGACGTCTCGACGTCAGAGTCAGATGATTCTTCTTCTTCGGACTCGGCGATATCCTCGCC
AGCAGCCGACCTTCGCAGAAGCCCCTCGCTATCAGATTGGCTTGCCCCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis