Browse Element(s) Details


Os.52001.1.S1_x_at

Description gb:AK100999.1
DB_XREF= gi:32986208
TID=Os.52001.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147B04, full insert sequence.
FL= gb:AK100999.1 gb:AK064514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0103011/11Phospholipid-transporting ATPase 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01010OsAffx.26673.1.S1_at11/115+12587..14164hypothetical protein
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52001.1.S1_x_at--555--5831Chr05:39919..39943 (25 bp)
GACCGGATCATCTACTTGCTTTTGT
LOC_Os05g01030
Os.52001.1.S1_x_at--721--10251Chr05:39939..39963 (25 bp)
TTTGTCTGCACTTGTCCTGATTTCA
LOC_Os05g01030
Os.52001.1.S1_x_at--574--7971Chr05:39970..39994 (25 bp)
GGATCGGTTTTCTTTGGCATCACAA
LOC_Os05g01030
Os.52001.1.S1_x_at--375--1311Chr05:40027..40051 (25 bp)
AGATGGTACCTTAGGCCGGACGACT
LOC_Os05g01030
Os.52001.1.S1_x_at--691--3091Chr05:40092..40116 (25 bp)
AATACTTCATTTCTTCACAGCCATG
LOC_Os05g01030
Os.52001.1.S1_x_at--677--8171Chr05:40127..40151 (25 bp)
GGAACTTCATACCAATCTCTCTGTA
LOC_Os05g01030
Os.52001.1.S1_x_at--678--1251Chr05:40163..40187 (25 bp)
AGATTGTCAAGCTTCTGCAGGCTCT
LOC_Os05g01030
Os.52001.1.S1_x_at--582--9051Chr05:40178..40202 (25 bp)
TGCAGGCTCTGTTCATCAACCAAGA
LOC_Os05g01030
Os.52001.1.S1_x_at--19--2371Chr05:40301..40325 (25 bp)
AAACTGGGACTCTGACTTGCAATTC
LOC_Os05g01030
Os.52001.1.S1_x_at--1080--2271Chr05:40339..40363 (25 bp)
AAATGCTCAATTGCCGGAACTGCGT
LOC_Os05g01030
Os.52001.1.S1_x_at--633--8171Chr05:40354..40378 (25 bp)
GGAACTGCGTATGGCCGTGGTATCA
LOC_Os05g01030
Target Sequence 
GACCGGATCATCTACTTGCTTTTGTCTGCACTTGTCCTGATTTCAGTCATCGGATCGGTTTTCTTTGGCATCACAACCAG
AGATGACCTACAAGATGGCAGGCCGAAAAGATGGTACCTTAGGCCGGACGACTCTACCATCTACTTCAAGCCAACCAAAG
CAGCCATATCAGCAATACTTCATTTCTTCACAGCCATGATNCTATATGGGAACTTCATACCAATCTCTCTGTACATCTCT
ATTGAGATTGTCAAGCTTCTGCAGGCTCTGTTCATCAACCAAGACATTCATATGTATCATGAGGAGACCGACACACCGGC
TCATGCTAGAACATCCAACTTGAACGAGGAGTTGGGTCAAGTGGACACGATCCTTACGGATAAAACTGGGACTCTGACTT
GCAATTCCATGGAGTTCATCAAATGCTCAATTGCCGGAACTGCGTATGGCCGTGGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52001.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis