Browse Element(s) Details


Os.28975.1.S1_at

Description gb:AK110818.1
DB_XREF= gi:32996027
TID=Os.28975.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G06, full insert sequence.
FL= gb:AK110818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0104011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28975.1.S1_at--229--5791Chr05:43793..43817 (25 bp)
GACGACGACGTTAGGGCATCAGCAA
LOC_Os05g01040
Os.28975.1.S1_at--1033--9654Chr03:2717973..2717997 (25 bp)
TCAGCAATGTATCCTTCCCAAGTAG
NONE
Os.28975.1.S1_at--643--3473Chr03:2718176..2718200 (25 bp)
CAGGTCATAGCGCTATTGCTTGGTA
NONE
Os.28975.1.S1_at--180--7873Chr03:2718197..2718221 (25 bp)
GGTATTTGTTGCTTACTACCTCCAC
NONE
Os.28975.1.S1_at--700--8336Chr05:19573039..19573058 (20 bp)
GGCTGTATTTATTGCTTACTACCTA
NONE
Os.28975.1.S1_at--474--151Chr05:43467..43491 (25 bp)
ATTATGGATGCCCTATGGTCTCATG
LOC_Os05g01040
Os.28975.1.S1_at--825--7131Chr05:43450..43474 (25 bp)
GTCTCATGTGGCGTCTCAACTGAAC
LOC_Os05g01040
Os.28975.1.S1_at--278--3991Chr05:43401..43425 (25 bp)
CGTGGTGGTGGCTAACAAGTTACAT
LOC_Os05g01040
Os.28975.1.S1_at--235--3151Chr05:43339..43363 (25 bp)
AATTAACGCCGAATGTCTTGCCTGA
LOC_Os05g01040
Os.28975.1.S1_at--368--2871Chr05:43306..43330 (25 bp)
AAGTGTTCCTGATTTCCAGGCCATC
LOC_Os05g01040
Os.28975.1.S1_at--155--1871Chr05:43266..43290 (25 bp)
ACGAGTTCTTTTTAGGTGATCACAT
LOC_Os05g01040
Target Sequence 
GACGACGACGTTAGGGCATCAGCAATGTATCCTTCCCAAGTAGTAAATAAGGTGGGACCAACCAAAAGCAGGTAATTGTT
ATTCAAGATCTCACAATGTATAGGAGGTAATAAGATAGGTCCCACATGTATATAAAAATCTAAAAGTATACGGTAGTATG
GATAGAGAAGAAAGATTCAATACATAGCTGAGAGAATCAATGATTTTTTATTCCTTACTAGCAGGTCATAGCGCTATTGC
TTGGTATTTGTTGCTTACTACCTCCACAATGTTTACTACCTGGTATTAAGGCTGTATTTATTGCTTACTACCTAGTTTTT
GAGCACATTATGGATGCCCTATGGTCTCATGTGGCGTCTCAACTGAACCACCCACAAGAAACGAAACGTCGTCGTGGTGG
TGGCTAACAAGTTACATCATTTTAGAATGGAATAATGCTGCCTGTAAGTGTAACAATTAACGCCGAATGTCTTGCCTGAC
CAAAAACAAGTGTTCCTGATTTCCAGGCCATCAAATTTGACTATCACACGAGTTCTTTTTAGGTGATCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis