Browse Element(s) Details


Os.16909.1.S1_s_at

Description gb:BI811766
DB_XREF= gi:16577671
DB_XREF=A005G09
CLONE=A005G09
TID=Os.16909.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16909 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177163.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0102011/11Paired amphipathic helix repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g00998NANA5+2342..3402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01002NANA5+3623..4090hypothetical protein
LOC_Os05g01006OsAffx.8762.1.S1_at1/115+4598..8876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01010OsAffx.26673.1.S1_at11/115+12587..14164hypothetical protein
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16909.1.S1_s_at--84--10131Chr05:17800..17823 (24 bp)
TATGACGATATCTTCCTTGGGAGGA
LOC_Os05g01020
Os.16909.1.S1_s_at--1042--8151Chr05:17681..17705 (25 bp)
GGAAACGATGACTCTCAAGCTTCTT
LOC_Os05g01020
Os.16909.1.S1_s_at--856--10551Chr05:17661..17685 (25 bp)
TTCTTTGAAGGCCATTGATGCTTTC
LOC_Os05g01020
Os.16909.1.S1_s_at--767--6331Chr05:17645..17669 (25 bp)
GATGCTTTCATGGTTACTAATGGTC
LOC_Os05g01020
Os.16909.1.S1_s_at--663--7871Chr05:17452..17476 (25 bp)
GGTTTCCTATGTCCTTGATACTGAA
LOC_Os05g01020
Os.16909.1.S1_s_at--992--6071Chr05:17399..17423 (25 bp)
GAGTTTCATCTAGTGGAACCATACC
LOC_Os05g01020
Os.16909.1.S1_s_at--1105--5591Chr05:16916..17314 (25 bp)
GAAATTCTGCCGCTGTATCAAATCC
LOC_Os05g01020
Os.16909.1.S1_s_at--88--6331Chr05:16889..16913 (25 bp)
GATGCTGACGTGCTTCGAAAACTGC
LOC_Os05g01020
Os.16909.1.S1_s_at--100--5531Chr05:16873..16897 (25 bp)
GAAAACTGCCATGTGAACCTTAATA
LOC_Os05g01020
Os.16909.1.S1_s_at--1079--2271Chr05:16795..16819 (25 bp)
AAATGCTGAAGTGTGTGGCAACCGT
LOC_Os05g01020
Os.16909.1.S1_s_at--29--7011Chr05:16704..16728 (25 bp)
GTACTGGCTACACTAACTTGTCACT
LOC_Os05g01020
Target Sequence 
TATGACGATATCTTCCTTGGGAGGAATAAACGGAAGCGTGGGGGAAACGATGACTCTCAAGCTTCTTTGAAGGCCATTGA
TGCTTTCATGGTTACTAATGGTCTTGAATGCAAGATATCCTGCANAATCCTCAAAGGTTTCCTATGTCCTTGATACTGAA
GATTTCTTATTTCATATAAGAAAGAGGAGAGTTTCATCTAGTGGAACCATACCTGAAAAGGCGGATTTTGTGAAAGCTTA
TGCTGTAAAAGTACAGCGATTCCATAGATTTCTATCNAGGCCCTAGGGTTAAGCGGCGAAATTCTGCCGCTGTATCAAAT
CCGAGATGCTGACGTGCTTCGAAAACTGCCATGTGAACCTTAATATTCCAAAATTTCAGACAACTGTACCTTTGGAATAA
TAGATGGGATACTCTGGTAAATGCTGAAGTGTGTGGCAACCGTGNAGTTCTCTTAATGGCCTAAAATTGTGTACATATGT
ATCNTGAGANTGCATTTATNCNNGTTNATTGTACTGGCTACACTAACTTGTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16909.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis