Browse Element(s) Details


Os.25368.1.S1_at

Description gb:AK102847.1
DB_XREF= gi:32988056
TID=Os.25368.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110A21, full insert sequence.
FL= gb:AK102847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0856011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08510NANA5+4622209..4623621Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os05g08519NANA5+4625328..4625561NA
LOC_Os05g08530NANA5+4631245..4636225NPH3 family protein, expressed
LOC_Os05g08540Os.5609.1.S1_at10/115+4638681..4640608oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g08550NANA5+4641642..4642491hypothetical protein
LOC_Os05g08560Os.25368.1.S1_at11/115+4647142..4650404transposon protein, putative, unclassified, expressed
LOC_Os05g08570Os.4822.1.S1_at11/115+4659483..4662516AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25368.1.S1_at--197--4351Chr05:4647669..4647693 (25 bp)
CCAGCGCTGGAAAGGAACACTCGTT
LOC_Os05g08560
Os.25368.1.S1_at--485--2391Chr05:4647654..4647678 (25 bp)
AACACTCGTTGGCACTGGAACCAAT
LOC_Os05g08560
Os.25368.1.S1_at--93--6131Chr05:4647579..4647603 (25 bp)
GAGGGACTGTTGTTAACTTGTCAGA
LOC_Os05g08560
Os.25368.1.S1_at--512--6011Chr05:4647483..4647507 (25 bp)
GAGAGAAACGCGTCATTCCGTCCAG
LOC_Os05g08560
Os.25368.1.S1_at--1000--1391Chr05:4647451..4647475 (25 bp)
AGACATTGGTTTCTCTGTTCTTCCT
LOC_Os05g08560
Os.25368.1.S1_at--65--10811Chr05:4647313..4647337 (25 bp)
TTGTTATATTTGTAAGCCCCTTGTG
LOC_Os05g08560
Os.25368.1.S1_at--425--1671Chr05:4647299..4647323 (25 bp)
AGCCCCTTGTGCTCAAGTCTGTAAT
LOC_Os05g08560
Os.25368.1.S1_at--756--2971Chr05:4647236..4647260 (25 bp)
AATGGTGTACTCTCTAGTGATGGAC
LOC_Os05g08560
Os.25368.1.S1_at--885--7391Chr05:4647220..4647244 (25 bp)
GTGATGGACATTTCTCTGTTTGAGA
LOC_Os05g08560
Os.25368.1.S1_at--601--5591Chr05:4647194..4647218 (25 bp)
GATAATGTCCAATTAAACCCGACTG
LOC_Os05g08560
Os.25368.1.S1_at--907--10471Chr05:4647182..4647206 (25 bp)
TTAAACCCGACTGCTCTGTGAACAA
LOC_Os05g08560
Target Sequence 
CCAGCGCTGGAAAGGAACACTCGTTGGCACTGGAACCAATCAGTTCTAAATGTAACAATGAACGTCCGGAAAATGTTCCT
TNNNATGGATGAGGGACTGTTGTTAACTTGTCAGAGGANNNNNCAAGNGGAGGAAGAAAAGCGAGCTGCATNTGAGGAGC
GGAGAAAGCTTATATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTNACCGGAGACATTGGTTTCTCTGTTCTT
CCTGCATCTGCTCCCTTGGTAGCACCCNCCATGACATAATATGACATGCGTTNGGAATTTCGANTGTACTTCGGTTCATT
TCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATA
GTTATTGGTTTGAGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAA
TGTCCAATTAAACCCGACTGCTCTGTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis