Browse Element(s) Details


Os.25539.1.S1_at

Description gb:AK106903.1
DB_XREF= gi:32992112
TID=Os.25539.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H10, full insert sequence.
FL= gb:AK106903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g385805/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38540NANA2+23296233..23298128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38550NANA2+23298381..23302901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38560NANA2+23305152..23306879retrotransposon protein, putative, unclassified
LOC_Os02g38570NANA2+23307510..23310650retrotransposon protein, putative, unclassified
LOC_Os02g38580OsAffx.24637.3.S1_x_at11/112+23320467..23325974Protein phosphatase 2C containing protein, expressed
LOC_Os02g38580Os.25539.1.S1_at5/112+23320467..23325974Protein phosphatase 2C containing protein, expressed
LOC_Os02g38589Os.54542.1.S1_at9/112+23326698..23327831F-box domain containing protein
LOC_Os02g38598NANA2+23328325..23329341hypothetical protein
LOC_Os02g38610NANA2+23331972..23332415retrotransposon protein, putative, unclassified
LOC_Os02g38620NANA2+23334537..23337948retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38630NANA2+23340907..23345328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38640Os.45173.1.S1_x_at5/112+23348757..23350688retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25539.1.S1_at--805--6892Chr02:23325903..23325927 (25 bp)
GTATCATTGATACTGTACGTTAACT
LOC_Os02g38580
Os.25539.1.S1_at--265--1972Chr02:23325914..23325938 (25 bp)
ACTGTACGTTAACTACTTGCACCTG
LOC_Os02g38580
Os.25539.1.S1_at--559--1252Chr02:23325920..23325944 (25 bp)
CGTTAACTACTTGCACCTGTACGTT
LOC_Os02g38580
Os.25539.1.S1_at--430--2352Chr02:23325926..23325950 (25 bp)
CTACTTGCACCTGTACGTTAACTAC
LOC_Os02g38580
Os.25539.1.S1_at--390--5072Chr02:23325932..23325956 (25 bp)
GCACCTGTACGTTAACTACTTTGCT
LOC_Os02g38580
Os.25539.1.S1_at--44--7772Chr02:23325960..23325984 (25 bp)
GGTGAAGTTTTCCTCATTCTTCTAG
NONE
Os.25539.1.S1_at--484--10672Chr02:23325969..23325993 (25 bp)
TTCCTCATTCTTCTAGCTCTATGTG
NONE
Os.25539.1.S1_at--1072--9532Chr02:23325980..23326004 (25 bp)
TCTAGCTCTATGTGATACGTTTTGG
NONE
Os.25539.1.S1_at--28--4832Chr02:23325984..23326008 (25 bp)
GCTCTATGTGATACGTTTTGGTTTT
NONE
Os.25539.1.S1_at--37--10252Chr02:23326000..23326024 (25 bp)
TTTGGTTTTAAATCGATTCATGCAT
NONE
Os.25539.1.S1_at--228--2272Chr02:23326009..23326033 (25 bp)
AAATCGATTCATGCATTGGATAATG
NONE
Target Sequence 
GTATCATTGATACTGTACGTTAACTACTTGCACCTGTACGTTAACTACTTTGCTTTTGGTGAAGTTTTCCTCATTCTTCT
AGCTCTATGTGATACGTTTTGGTTTTAAATCGATTCATGCATTGGATAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis