Browse Element(s) Details


Os.25811.1.S1_at

Description gb:AU108592
DB_XREF= gi:10794626
DB_XREF=AU108592
CLONE=C12628
TID=Os.25811.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25811 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:O04204 (A.thaliana) RL0A_ARATH 60S acidic ribosomal protein P0-A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0388011/1160S acidic ribosomal protein P0, putative, expressed
LOC_Os11g040701/1160S acidic ribosomal protein P0, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03850NANA12+1574190..1576956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed
LOC_Os12g03870NANA12+1593733..1599962major facilitator superfamily antiporter, putative
LOC_Os12g03880Os.25811.1.S1_at11/1112+1600954..160343260S acidic ribosomal protein P0, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25811.1.S1_at--985--8212Chr12:1601776..1601800 (25 bp)
GGCAATCTCATACCCAACTATCGCA
LOC_Os12g03880
Os.25811.1.S1_at--370--9111Chr12:1601196..1601220 (25 bp)
TGCTGCTGTAGCTTCTTCCAAGGAG
LOC_Os12g03880
Os.25811.1.S1_at--1157--9351Chr12:1601113..1601137 (25 bp)
TCGACTAAAGCCTCTGATGCCATAT
LOC_Os12g03880
Os.25811.1.S1_at--878--6351Chr12:1601098..1601122 (25 bp)
GATGCCATATCTTTGCCAAGTCGAA
LOC_Os12g03880
Os.25811.1.S1_at--430--4391Chr12:1601084..1601108 (25 bp)
GCCAAGTCGAAAGTTTTGTTTCAGT
LOC_Os12g03880
Os.25811.1.S1_at--283--6731Chr12:1601061..1601085 (25 bp)
GTTCTAAACATCAAAGTCTGTCTAT
LOC_Os12g03880
Os.25811.1.S1_at--51--7191Chr12:1601046..1601070 (25 bp)
GTCTGTCTATAATCTTTAGCATTTC
LOC_Os12g03880
Os.25811.1.S1_at--562--4951Chr12:1601028..1601052 (25 bp)
GCATTTCAAGCTTCTGGTAGTCAAG
LOC_Os12g03880
Os.25811.1.S1_at--861--7851Chr12:1601013..1601037 (25 bp)
GGTAGTCAAGAACTATCTAGGCCTT
LOC_Os12g03880
Os.25811.1.S1_at--623--3691Chr12:1600997..1601021 (25 bp)
CTAGGCCTTAGCGTGTATCCAACAA
LOC_Os12g03880
Os.25811.1.S1_at--237--4671Chr12:1600987..1601011 (25 bp)
GCGTGTATCCAACAATGTTATCTTT
LOC_Os12g03880
Target Sequence 
GGCAATCTCATACCCAACTATCGCAGNTGCGCCACACATGTTCCTCAATGGGTACAAGAATGTGCTCGCTGTTGCTGTGG
AGACCGAATACTCATACCCACATGCTGACAAGATCAAGGAGTATTTGAAGGACCCCAGCAAGTTTGCTGTTGCTGCCCCT
GTTGCTGCTGCTGACAGTGGCGCTGCTGCTGTAGCTTCTTCCAAGGAGGAAGAGAAGAAGGAAGAGCCCGAGGAAGAATC
TGACGGTGACCTGGGCATGAGCCTCTTCGACTAAAGCCTCTGATGCCATATCTTTGCCAAGTCGAAAGTTTTGTTTCAGT
TCTAAACATCAAAGTCTGTCTATAATCTTTAGCATTTCAAGCTTCTGGTAGTCAAGAACTATCTAGGCCTTAGCGTGTAT
CCAACAATGTTATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis