Browse Element(s) Details


Os.53105.1.S1_at

Description gb:AK070844.1
DB_XREF= gi:32980867
TID=Os.53105.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073J15, full insert sequence.
FL= gb:AK070844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3330011/11nodulin, putative, expressed
LOC_Os11g041406/11Integral membrane protein DUF6 containing protein
LOC_Os12g039205/11Nodulin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33250NANA12+20089739..20090221transposon protein, putative, unclassified
LOC_Os12g33260NANA12+20092975..20095625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33270NANA12+20096706..20099748hypothetical protein
LOC_Os12g33280NANA12+20100110..20104904retrotransposon protein, putative, unclassified
LOC_Os12g33290NANA12+20108758..20109162hypothetical protein
LOC_Os12g33300Os.53105.1.S1_at11/1112+20109577..20112636nodulin, putative, expressed
LOC_Os12g33300OsAffx.30809.1.S1_x_at1/1112+20109577..20112636nodulin, putative, expressed
LOC_Os12g33320Os.17302.1.S1_at2/1112+20121819..20130236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g33330NANA12+20130894..20136989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33340OsAffx.21897.5.S1_x_at7/1112+20137307..20140248retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53105.1.S1_at--814--10691Chr12:20110249..20110384 (25 bp)
TTGCCATCCTATACTCGGGTGTTAT
LOC_Os12g33300
Os.53105.1.S1_at--1066--793Chr12:1624703..1624727 (25 bp)
ATGGTGACGGGAGTGTCCTACTACC
LOC_Os12g03920
Os.53105.1.S1_at--264--9893Chr12:1624721..1624745 (25 bp)
TACTACCTGCAAACGTGGTGCCTAG
LOC_Os12g03920
Os.53105.1.S1_at--1124--3693Chr12:1624742..1624766 (25 bp)
CTAGAGATGAGAGGCCCCATGTTCT
LOC_Os12g03920
Os.53105.1.S1_at--226--4411Chr12:20110149..20110173 (25 bp)
GCCACTCTGTTTCGTGTTCACAATA
LOC_Os12g33300
Os.53105.1.S1_at--739--233Chr12:1624802..1624826 (25 bp)
ATATTTTGCTCATCCTTCTTTCTTG
LOC_Os12g03920
Os.53105.1.S1_at--674--6013Chr12:1624827..1624847 (21 bp)
GAGAGATTGTTCACCTCGGCAGCAT
LOC_Os12g03920
Os.53105.1.S1_at--1076--7171Chr12:20109952..20109976 (25 bp)
GTCGGAAGTCTTTACACCATGCTGT
LOC_Os12g33300
Os.53105.1.S1_at--522--1891Chr12:20109808..20109832 (25 bp)
ACGTTGACAGGGTCGGCAGCTTTGC
LOC_Os12g33300
Os.53105.1.S1_at--133--5052Chr11:1678431..1678454 (24 bp)
GCAGCTTTGCACGTCCAAGAACTAT
LOC_Os11g04140
Os.53105.1.S1_at--497--5072Chr12:20109752..20109776 (25 bp)
GCAGCCCTTTTATTTAGTCACCTTA
LOC_Os12g33300
Target Sequence 
TTGCCATCCTATACTCGGGTGTTATGGTGACGGGAGTGTCCTACTACCTGCAAACGTGGTGCCTAGAGATGAGAGGCCCC
ATGTTCTTCGCCTCCTGGACGCCACTCTGTTTCGTGTTCACAATATTTTGCTCATCCTTCTTTCTTGGAGAGATTGTTCA
CCTCGGCAGCATCTTGGGTGGAATTTTGCTGGTCGGAAGTCTTTACACCATGCTGTGGGGTAAGAGCAAAGAGGGCAATG
AGACTGACGATGTCACCGATGACGATATTGAGAAATCTACACATATCTACCCCAGAGAGCAACAACATACTACAACAGAT
CAGGACAAAGAATCGACGTTGACAGGGTCGGCAGCTTTGCACGTCCAAGAACTATAATTTTTTTTGGCATGGCAGCCCTT
TTATTTAGTCACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis