Browse Element(s) Details


Os.17302.1.S1_at

Description gb:AK064476.1
DB_XREF= gi:32974494
TID=Os.17302.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A01, full insert sequence.
FL= gb:AK064476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g270702/11expressed protein
LOC_Os12g333202/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17302.1.S1_at--1088--4911Chr10:14658031..14658116 (24 bp)
GCTTGCATCCTCACCAAAATTTGAT
NONE
Os.17302.1.S1_at--1102--5512Chr12:20125929..20125949 (21 bp)
GAAAAGACATGACCGGTAACTGAAG
LOC_Os12g33320
Os.17302.1.S1_at--455--9252Chr12:20125885..20125909 (25 bp)
TCCTTTTGGCATTGGTTCAGATTAG
LOC_Os12g33320
Os.17302.1.S1_at--998--1471Chr10:12009730..12009754 (25 bp)
AGAATTGTCTTTAGTGTACCATAAT
NONE
Os.17302.1.S1_at--237--7151Chr10:12009697..12009721 (25 bp)
GTCTTTAGAATGTTGCTCCGCCTAT
NONE
Os.17302.1.S1_at--249--10111Chr10:12009675..12009699 (25 bp)
TATGTGGGCCGTTCGTCCCCATAGG
NONE
Os.17302.1.S1_at--359--731Chr10:12009628..12009652 (25 bp)
ATGTTGGGCGTTCGTTTTAGGCTCA
NONE
Os.17302.1.S1_at--208--6612Chr08:20346196..20346220 (25 bp)
GTTGGACAGGGTTAGTACCATCAGA
NONE
Os.17302.1.S1_at--630--7932Chr08:20346223..20346247 (25 bp)
GGATTCTGGCAGTATGTCAATGTAG
NONE
Os.17302.1.S1_at--171--8292Chr09:16470613..16470637 (25 bp)
GGCATCATTCAGTTATTCTGCTTTT
LOC_Os09g27070
Os.17302.1.S1_at--1004--5513Chr09:16470638..16470658 (21 bp)
GAAAGAGGAACCACCTGTCAGGGAA
LOC_Os09g27070
Target Sequence 
GCTTGCATCCTCACCAAAATTTGATTAGCAAAATGCTGCAGTTAAGAAGCTCAAGAAAAGACATGACCGGTAACTGAAGA
AAGGTGGAGATGTTCTTTTCCTTTTGGCATTGGTTCAGATTAGCAAAATGCTGCAGTTAAGAATCTCAAGAAANNNNGNN
NNNNNNANNNCNNNCNTNNTNNNNNNNNCNNTTNCTNNNNNCNNNTNCNAGGTGATTGTTNNGAAGTGGCATGCACAGGA
GAGATTAATAAACTGCCAGAAGAGGAGATGACATATATCTGATTGATAGAATTGTCTTTAGTGTACCATAATTATACTTN
GTCTTTAGAATGTTGCTCCGCCTATGTGGGCCGTTCGTCCCCATAGGGTCATGCCAATTGCCAAAATTGATGTTGGGCGT
TCGTTTTAGGCTCATGTTGTTAGTGTAAATGTGGTACACNTGATAGAGATGCAGAAAGGGTTATTCTGTAAAAATGGGAG
TATGGGTTGGTCCTGTTGGACAGGGTTAGTACCATCAGAGAGGATTCTGGCAGTATGTCAATGTAGGCATCATTCAGTTA
TTCTGCTTTTGAAAGAGGAACCACCTGTCAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis