Browse Element(s) Details


OsAffx.17919.1.S1_at

Description tigr:9637.m02372
TID=OsAffx.17919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2709010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17919.1.S1_at--286--7931Chr09:16485021..16485045 (25 bp)
GGATTATCTTGGTGGCCGTGATTTC
LOC_Os09g27090
OsAffx.17919.1.S1_at--514--10591Chr09:16484989..16485013 (25 bp)
TTCTCGGCAAGCTTCTTCATGTTAG
LOC_Os09g27090
OsAffx.17919.1.S1_at--511--5391Chr09:16484964..16484988 (25 bp)
GAAGCTTCACCTCTTTGTGTCCTAT
LOC_Os09g27090
OsAffx.17919.1.S1_at--990--10831NONE
TTGTGTCCTATCAACCGTCAAATGG
NONE
OsAffx.17919.1.S1_at--1113--6471Chr09:16484183..16484207 (25 bp)
GATACTAGAGACACTTCCATGCACC
LOC_Os09g27090
OsAffx.17919.1.S1_at--276--10691Chr09:16484169..16484193 (25 bp)
TTCCATGCACCTTTGACAGCTTGAA
LOC_Os09g27090
OsAffx.17919.1.S1_at--477--9871Chr09:16484122..16484146 (25 bp)
TACATGGACTTCTGTGAACTGCCCG
LOC_Os09g27090
OsAffx.17919.1.S1_at--1061--5431Chr09:16484107..16484131 (25 bp)
GAACTGCCCGCGATTTTAACGATTT
LOC_Os09g27090
OsAffx.17919.1.S1_at--308--3511Chr09:16483877..16483901 (25 bp)
CATGTGCGCCAACCTTCAAATTGTA
LOC_Os09g27090
OsAffx.17919.1.S1_at--843--5171Chr09:16483789..16483813 (25 bp)
GCAAGTCTTCTTCGCACAATATCTG
LOC_Os09g27090
OsAffx.17919.1.S1_at--1111--1791Chr09:16483691..16483715 (25 bp)
ACCCCAAGCTCAGATCCTGTTTAAA
LOC_Os09g27090
Target Sequence 
GGATTATCTTGGTGGCCGTGATTTCGCCGAGTTTCTCGGCAAGCTTCTTCATGTTAGGAAGCTTCACCTCTTTGTGTCCT
ATCAACCGTCAAATGGAGCTAAGATACTAGAGACACTTCCATGCACCTTTGACAGCTTGAAGAGCTTGAAGAGCTTGAAG
TTATACATGGACTTCTGTGAACTGCCCGCGATTTTAACGATTTTTTGCTTACTAAGGAATGCTCCGAATCTCGAAAAACT
CAAAATAATGATCACTGATAACGAGCAGAAAGTTGAGGCAAATGGGGTGTTCCAAAATGCAGAGTGGACTGGTGGCATGT
GCGCCAACCTTCAAATTGTACAGATAACGAGAATTAGTTGGCTTCCAAATGAAATGTCTTTTATAGAGCTGATTCTCTCT
AAAGCAAGTCTTCTTCGCACAATATCTGTTACTCATGGTGATAAATGCCTAATGTCTAATGAGGATGCGCTCAGTGAGTT
ACTAAAATACAAAAGAGCTTCACCCCAAGCTCAGATCCTGTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis