Browse Element(s) Details


OsAffx.17920.1.S1_at

Description tigr:9637.m02373
TID=OsAffx.17920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2710011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17920.1.S1_at--922--811Chr09:16487536..16487560 (25 bp)
ATGGTTACCTCGCTTGAGACGCTCG
LOC_Os09g27100
OsAffx.17920.1.S1_at--641--5991Chr09:16487551..16487575 (25 bp)
GAGACGCTCGACTATTACTATTATG
LOC_Os09g27100
OsAffx.17920.1.S1_at--333--9891Chr09:16487566..16487590 (25 bp)
TACTATTATGCCTTGCCGTTATCGC
LOC_Os09g27100
OsAffx.17920.1.S1_at--1035--5311Chr09:16488369..16488393 (25 bp)
GAAGGGACTACCATCTTCCTACAAA
LOC_Os09g27100
OsAffx.17920.1.S1_at--218--6751Chr09:16488412..16488436 (25 bp)
GTTCATCTAGACTTCAACCATGCTC
LOC_Os09g27100
OsAffx.17920.1.S1_at--622--71Chr09:16488442..16488466 (25 bp)
ATTCTGTCTACGCTTAACTTCCTAA
LOC_Os09g27100
OsAffx.17920.1.S1_at--452--3051Chr09:16488901..16488925 (25 bp)
AATCTCCATACCCTTTGGCAGCGGA
LOC_Os09g27100
OsAffx.17920.1.S1_at--474--10111Chr09:16488930..16488954 (25 bp)
TATGGAAATTTATGCCCCAGCCTTC
LOC_Os09g27100
OsAffx.17920.1.S1_at--839--4311Chr09:16488949..16488973 (25 bp)
GCCTTCTTTTTCTCCAAATGTCTTA
LOC_Os09g27100
OsAffx.17920.1.S1_at--664--2291Chr09:16488964..16488988 (25 bp)
AAATGTCTTATGTCACTTCGCAGAA
LOC_Os09g27100
OsAffx.17920.1.S1_at--402--7931Chr09:16488998..16489022 (25 bp)
GGATTTCATTCGTCTGATCTTATCG
LOC_Os09g27100
Target Sequence 
ATGGTTACCTCGCTTGAGACGCTCGACTATTACTATTATGCCTTGCCGTTATCGCCGACTAAATTATTGAAGGGACTACC
ATCTTCCTACAAAAATTTGAAGAGATTGAAAGTTCATCTAGACTTCAACCATGCTCCACCGATTCTGTCTACGCTTAACT
TCCTAAGGACCGCTCCAAACCTGACTCAACTTGTGATTCAGGACTTTACTGATGACTCATATGCACAATCTCCATACCCT
TTGGCAGCGGAGCTATATGGAAATTTATGCCCCAGCCTTCTTTTTCTCCAAATGTCTTATGTCACTTCGCAGAACAACGA
AATGGATTTCATTCGTCTGATCTTATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis