Browse Element(s) Details


Os.11585.1.S1_at

Description gb:AK100287.1
DB_XREF= gi:32985496
TID=Os.11585.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075G23, full insert sequence.
FL= gb:AK100287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2708011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11585.1.S1_at--199--7391Chr09:16480155..16480179 (25 bp)
GTGAGAAGCTTAATGACGAGTGAAT
LOC_Os09g27080
Os.11585.1.S1_at--1083--8931Chr09:16480191..16480215 (25 bp)
TGACGATTCTTTAACCATCTACGCC
LOC_Os09g27080
Os.11585.1.S1_at--919--10331Chr09:16480200..16480224 (25 bp)
TTTAACCATCTACGCCACAGGTCAG
LOC_Os09g27080
Os.11585.1.S1_at--253--9491Chr09:16480248..16480272 (25 bp)
TCTGCTCCTTGACAGTGGGTCAGCA
LOC_Os09g27080
Os.11585.1.S1_at--1090--7471Chr09:16480262..16480286 (25 bp)
GTGGGTCAGCAGCAATATGCACAAT
LOC_Os09g27080
Os.11585.1.S1_at--407--5052Chr09:16480270..16480294 (25 bp)
GCAGCAATATGCACAATTATTTAGT
LOC_Os09g27080
Os.11585.1.S1_at--93--1171Chr09:16480292..16480316 (25 bp)
AGTCATGATCACTTGACCAGTGAAT
LOC_Os09g27080
Os.11585.1.S1_at--205--2071Chr09:16480302..16480326 (25 bp)
ACTTGACCAGTGAATTCGTGCTGAT
LOC_Os09g27080
Os.11585.1.S1_at--489--5211Chr09:16480313..16480337 (25 bp)
GAATTCGTGCTGATGAGAGTTCAGA
LOC_Os09g27080
Os.11585.1.S1_at--496--6071Chr09:16480329..16480353 (25 bp)
GAGTTCAGAGACGAGACACCAATTT
LOC_Os09g27080
Os.11585.1.S1_at--610--1392Chr09:16480337..16480361 (25 bp)
AGACGAGACACCAATTTTCAGGTTC
LOC_Os09g27080
Target Sequence 
GTGAGAAGCTTAATGACGAGTGAATATGTATATATTTGACGATTCTTTAACCATCTACGCCACAGGTCAGGANTTCAGGA
TATATAGTGCCCCTCTGCTCCTTGACAGTGGGTCAGCAGCAATATGCACAATTATTTAGTCATGATCACTTGACCAGTGA
ATTCGTGCTGATGAGAGTTCAGAGACGAGACACCAATTTTCAGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis