Browse Element(s) Details


Os.18226.1.S1_a_at

Description gb:AB095097.1
DB_XREF= gi:33354142
GEN=OsRSH3
TID=Os.18226.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18226 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRSH3 mRNA for plastid (p)ppGpp synthase, complete cds.
PROD=plastid (p)ppGpp synthase
FL= gb:AB095097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2705011/11RSH2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27020Os.51501.1.S2_x_at1/119+16434083..16434979hypothetical protein
LOC_Os09g27030Os.7860.1.S1_at9/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27030OsAffx.4696.1.S1_at1/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18226.1.S1_a_at--230--8571Chr09:16456657..16456681 (25 bp)
TGGATTCGCAGCACACTGGAGGTAC
LOC_Os09g27050
Os.18226.1.S1_a_at--308--2931Chr09:16456682..16456706 (25 bp)
AAGGAAGGCACCTGTAGGCACTCCT
LOC_Os09g27050
Os.18226.1.S1_a_at--471--931Chr09:16456697..16456721 (25 bp)
AGGCACTCCTTTGTACTCCAGATGG
LOC_Os09g27050
Os.18226.1.S1_a_at--554--1751Chr09:16456777..16456801 (25 bp)
ACCTGCATCTCTAGGCGACAGTGAT
LOC_Os09g27050
Os.18226.1.S1_a_at--359--1111Chr09:16456796..16456820 (25 bp)
AGTGATGCAATTAGGCCACCCTGTC
LOC_Os09g27050
Os.18226.1.S1_a_at--355--7271Chr09:16456818..16456842 (25 bp)
GTCCATTTCCCATGCATTCAGAAGA
LOC_Os09g27050
Os.18226.1.S1_a_at--421--1451Chr09:16456837..16456861 (25 bp)
AGAAGACTGCCCTTACTCATATACT
LOC_Os09g27050
Os.18226.1.S1_a_at--224--5831Chr09:16456881..16456905 (25 bp)
GACCGATATTTGTCATCCTACTGGA
LOC_Os09g27050
Os.18226.1.S1_a_at--192--5311Chr09:16457126..16457150 (25 bp)
GAAGGTTAACCACGAGCCCATAAGC
LOC_Os09g27050
Os.18226.1.S1_a_at--565--6051Chr09:16457235..16457259 (25 bp)
GAGATTCAGCGCATGTACGACCGTG
LOC_Os09g27050
Os.18226.1.S1_a_at--770--3391Chr09:16457288..16457312 (25 bp)
CAGCTCGAGGCGGTGACAGTACTTC
LOC_Os09g27050
Target Sequence 
TGGATTCGCAGCACACTGGAGGTACAAGGAAGGCACCTGTAGGCACTCCTTTGTACTCCAGATGGTGGAATGGGCTAGGT
GGGTGCTTACATGGCAATGTGAAGCAATGAACAAAGAACGACCTGCATCTCTAGGCGACAGTGATGCAATTAGGCCACCC
TGTCCATTTCCCATGCATTCAGAAGACTGCCCTTACTCATATACTCGNCAATGCGACCATGATGGACCGATATTTGTCAT
CCTACTGGAACATGACAAGATGTCTGTGCAAGAATTCCAAGCAAACTCAACTGTAATGAACCTCATGGATCGAGTTGGGA
CCAACACTCCAAGATGGAGTCCCTACCGCATCCCCATGAAGGAAGATCTGCGACCGAAGGTTAACCACGAGCCCATAAGC
GATCTGAACCGGAAGCTCAGCATGGGGGATGTGGTGGAGCTGACACCGGCCCTTCCTCACGAGTCGCTCCCCAATTACCG
GGAGGAGATTCAGCGCATGTACGACCGTGGCGGATTCGCCCTCGCCACCCGGGGTGGCAGCTCGAGGCGGTGACAGTACT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18226.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis