Browse Element(s) Details


Os.25952.1.S1_at

Description gb:AU086025
DB_XREF= gi:7332679
DB_XREF=AU086025
CLONE=S11393
TID=Os.25952.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25952 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2778011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27740OsAffx.27046.1.S1_at11/115+16078284..16081517hypothetical protein
LOC_Os05g27740Os.23623.1.A1_at1/115+16078284..16081517hypothetical protein
LOC_Os05g27749OsAffx.27053.1.S1_at11/115+16083470..16084687hypothetical protein
LOC_Os05g27760OsAffx.27054.1.S1_at11/115+16089380..16090042hypothetical protein
LOC_Os05g27770NANA5+16094038..16098387retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27780Os.37909.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27780Os.25952.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27790Os.48871.1.A1_at11/115+16105976..16108654expressed protein
LOC_Os05g27800OsAffx.4447.1.S1_at11/115+16124622..16125050expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009617biological_processresponse to bacteria
GO:0009644biological_processresponse to high light intensity
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25952.1.S1_at--380--4191Chr05:16100613..16100637 (25 bp)
CCCTTTCGTGTCTGAGCTGTGATTT
LOC_Os05g27780
Os.25952.1.S1_at--801--5891Chr05:16100600..16100624 (25 bp)
GAGCTGTGATTTTTCATTATCCGTT
LOC_Os05g27780
Os.25952.1.S1_at--413--10331Chr05:16100589..16100613 (25 bp)
TTTCATTATCCGTTTGCCTTTCTGA
LOC_Os05g27780
Os.25952.1.S1_at--679--551Chr05:16100582..16100606 (25 bp)
ATCCGTTTGCCTTTCTGATTAGCAC
LOC_Os05g27780
Os.25952.1.S1_at--971--10231Chr05:16100553..16100577 (25 bp)
TTTGGTGCGATTTGCCACCCTCAGA
LOC_Os05g27780
Os.25952.1.S1_at--1011--6511Chr05:16100545..16100569 (25 bp)
GATTTGCCACCCTCAGATAAGGAAG
LOC_Os05g27780
Os.25952.1.S1_at--926--8971Chr05:16100514..16100538 (25 bp)
TGAACTCTGAACAAGTGCAGCCTAG
LOC_Os05g27780
Os.25952.1.S1_at--1131--6871Chr05:16100486..16100510 (25 bp)
GTATGACGGACAGAAGCCCAGACAT
LOC_Os05g27780
Os.25952.1.S1_at--549--4551Chr05:16100471..16100495 (25 bp)
GCCCAGACATTGTTCCTGTAAGGAA
LOC_Os05g27780
Os.25952.1.S1_at--740--2231Chr05:16100446..16100470 (25 bp)
AAATTATACTTTTGACTCTACTCCT
LOC_Os05g27780
Os.25952.1.S1_at--607--10711Chr05:16100435..16100459 (25 bp)
TTGACTCTACTCCTTTAACCATTAA
LOC_Os05g27780
Target Sequence 
CCCTTTCGTGTCTGAGCTGTGATTTTTCATTATCCGTTTGCCTTTCTGATTAGCACTNGCTTTGGTGCGATTTGCCACCC
TCAGATAAGGAAGAGAGACTGAACTCTGAACAAGTGCAGCCTAGGGGGTATGACGGACAGAAGCCCAGACATTGTTCCTG
TAAGGAAAAATTATACTTTTGACTCTACTCCTTTAACCATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis