Browse Element(s) Details


Os.23623.1.A1_at

Description gb:AK071488.1
DB_XREF= gi:32981511
TID=Os.23623.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0002B05.13 (P0002B05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099J04, full insert sequence.
FL= gb:AK071488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3865011/11expressed protein
LOC_Os09g180102/11Protein kinase domain containing protein
LOC_Os05g277401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g38620Os.11543.1.S1_a_at11/111+22025849..220310423'-5' exonuclease family protein, expressed
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23623.1.A1_at--905--10751Chr01:22041213..22041237 (25 bp)
TTGAGTGCTTCCTATACCATGGTTC
LOC_Os01g38650
Os.23623.1.A1_at--1052--1153Chr01:22041242..22041266 (25 bp)
AGTCAAGTCTCGCAGGATTTCTCTC
LOC_Os01g38650
Os.23623.1.A1_at--942--1193Chr01:22041300..22041324 (25 bp)
AGTTTGTTTGCCACCATTCGAGTTC
LOC_Os01g38650
Os.23623.1.A1_at--1009--3574Chr01:22041314..22041338 (25 bp)
CATTCGAGTTCTTCAGTGGGTTTGG
LOC_Os01g38650
Os.23623.1.A1_at--726--10416Chr09:11022545..11022565 (21 bp)
TTAACGACGAACTCCGTGGACTTCT
LOC_Os09g18010
Os.23623.1.A1_at--157--9991Chr01:22041549..22041573 (25 bp)
TACCAGTTTGTCAAGCGTGCTGCAC
LOC_Os01g38650
Os.23623.1.A1_at--303--2915Chr09:11022702..11022726 (25 bp)
AAGGTTGCATTCGTCGCGGCATTGC
LOC_Os09g18010
Os.23623.1.A1_at--919--3771Chr01:22041639..22041663 (25 bp)
CTCTGCTGCGTGGTTTCATCATGAA
LOC_Os01g38650
Os.23623.1.A1_at--760--1192Chr01:22041663..22041687 (25 bp)
AGTTTGTAGCCTTAGTGCAGTTCCC
LOC_Os01g38650
Os.23623.1.A1_at--226--4912Chr01:22041714..22041738 (25 bp)
GCTTCCTTTTTATCTGTTTGGCAAT
LOC_Os01g38650
Os.23623.1.A1_at--1158--4231Chr01:22041755..22041779 (25 bp)
CCGTGAACTCTGTCGCTCTATATTA
LOC_Os01g38650
Target Sequence 
TTGAGTGCTTCCTATACCATGGTTCCATCAGTCAAGTCTCGCAGGATTTCTCTCCCCCTTTCTCGCATGTCGATCCAAGA
AGACAGCAGTTTGTTTGCCACCATTCGAGTTCTTCAGTGGGTTTGGGGATCTGGATGTGGGCTCCTTCTTCCTCTGTGTT
TCCCACCAGCTCATTCCATGCAAGGTTTGTTGTTCGGGTTGAGCTCACGCTTCTCAGATTTAACGACGAACTCCGTGGAC
TTCTCTTGCTGAGTCCGGTGATGCCCCCTCAAAATNTACGGCTCAGCAGCAAACCTCCCTTTTGTGCAGTCTTCGTGGAG
GCAACCGGATGGGGATTACCAGTTTGTCAAGCGTGCTGCACGCCAAAGGAGGCCCAAGGTTGCATTCGTCGCGGCATTGC
CGCAGCTCCCTGTTGATGTGCACCTTCTCTGCTGCGTGGTTTCATCATGAAGTTTGTAGCCTTAGTGCAGTTCCCCGTTC
TTTCGAAACGGATGGTTTTATGCTTCCTTTTTATCTGTTTGGCAATGTACTGGGATTTATTCCCGTGAACTCTGTCGCTC
TATATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23623.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis