Browse Element(s) Details


Os.35004.1.S1_at

Description gb:AK069327.1
DB_XREF= gi:32979351
TID=Os.35004.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative monosaccharide transporter 3 (P0002B05.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015H11, full insert sequence.
FL= gb:AK069327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3867011/11Sugar carrier protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38620Os.11543.1.S1_a_at11/111+22025849..220310423'-5' exonuclease family protein, expressed
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein
LOC_Os01g38720OsAffx.23560.1.S1_at11/111+22069156..22070902hypothetical protein
LOC_Os01g38730OsAffx.21201.1.S1_x_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730OsAffx.21201.1.S1_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.53217.1.S1_x_at4/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.43567.1.S1_x_at3/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.38172.1.S1_x_at2/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35004.1.S1_at--19--7811Chr01:22048767..22048791 (25 bp)
GGTCGAGATTACCTCCACAGTATGA
LOC_Os01g38670
Os.35004.1.S1_at--708--6051Chr01:22048771..22048795 (25 bp)
GAGATTACCTCCACAGTATGACATT
LOC_Os01g38670
Os.35004.1.S1_at--1027--10431Chr01:22048775..22048799 (25 bp)
TTACCTCCACAGTATGACATTCGTG
LOC_Os01g38670
Os.35004.1.S1_at--137--3811Chr01:22048779..22048803 (25 bp)
CTCCACAGTATGACATTCGTGCCGT
LOC_Os01g38670
Os.35004.1.S1_at--1128--2091Chr01:22048783..22048807 (25 bp)
ACAGTATGACATTCGTGCCGTAAAC
LOC_Os01g38670
Os.35004.1.S1_at--1022--6651Chr01:22048786..22048810 (25 bp)
GTATGACATTCGTGCCGTAAACGTT
LOC_Os01g38670
Os.35004.1.S1_at--650--3491Chr01:22048792..22048816 (25 bp)
CATTCGTGCCGTAAACGTTTATCTT
LOC_Os01g38670
Os.35004.1.S1_at--465--7291Chr01:22048797..22048821 (25 bp)
GTGCCGTAAACGTTTATCTTTCAAT
LOC_Os01g38670
Os.35004.1.S1_at--556--9551Chr01:22048813..22048837 (25 bp)
TCTTTCAATTTGTTTTCGGATTACG
LOC_Os01g38670
Os.35004.1.S1_at--613--9731Chr01:22048817..22048841 (25 bp)
TCAATTTGTTTTCGGATTACGTAAT
LOC_Os01g38670
Os.35004.1.S1_at--73--10471Chr01:22048833..22048857 (25 bp)
TTACGTAATTGAATCTGCTGGCTAC
LOC_Os01g38670
Target Sequence 
GGTCGAGATTACCTCCACAGTATGACATTCGTGCCGTAAACGTTTATCTTTCAATTTGTTTTCGGATTACGTAATTGAAT
CTGCTGGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis