Browse Element(s) Details


Os.11543.1.S1_a_at

Description gb:AK100223.1
DB_XREF= gi:32985432
TID=Os.11543.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.11543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0002B05.11 (P0002B05.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full insert sequence.
FL= gb:AK100223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3862011/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38600NANA1+22002399..22003015hypothetical protein
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g38620Os.11543.1.S1_a_at11/111+22025849..220310423'-5' exonuclease family protein, expressed
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11543.1.S1_a_at--1051--2271Chr01:22027707..22027731 (25 bp)
AAATGATGATTCGAGCAGCCACAGA
LOC_Os01g38620
Os.11543.1.S1_a_at--770--9291Chr01:22027677..22027701 (25 bp)
TCCGCTTCCTTCTCAGTATACATGA
LOC_Os01g38620
Os.11543.1.S1_a_at--988--2831Chr01:22027629..22027653 (25 bp)
AAGTATCTTTATGGCGTCTGTCAGT
LOC_Os01g38620
Os.11543.1.S1_a_at--1064--4011Chr01:22027615..22027639 (25 bp)
CGTCTGTCAGTTCGCAGTGAGCTAT
LOC_Os01g38620
Os.11543.1.S1_a_at--164--1111Chr01:22027600..22027624 (25 bp)
AGTGAGCTATACTGCAGGTGCTTTT
LOC_Os01g38620
Os.11543.1.S1_a_at--1144--2211Chr01:22027563..22027587 (25 bp)
ACAAGTATGCGGATTGGCCACCTCT
LOC_Os01g38620
Os.11543.1.S1_a_at--1114--3731Chr01:22027185..22027566 (25 bp)
CTCTTCCAACTGTCCCTGATGAAAT
LOC_Os01g38620
Os.11543.1.S1_a_at--669--1051Chr01:22027137..22027161 (25 bp)
AGGTGGATATCCTGTCAGTCTTGGA
LOC_Os01g38620
Os.11543.1.S1_a_at--490--9591Chr01:22027119..22027143 (25 bp)
TCTTGGATGTGCCTCCTGGCAAAAT
LOC_Os01g38620
Os.11543.1.S1_a_at--1090--1051Chr01:22026920..22026939 (20 bp)
AGGGACCTCCAGACAGGGTATTCAT
LOC_Os01g38620
Os.11543.1.S1_a_at--278--7691Chr01:22026066..22026089 (24 bp)
GGGTATTCATCATTGGACCAGTGCA
LOC_Os01g38620
Target Sequence 
AAATGATGATTCGAGCAGCCACAGATGATGTCCGCTTCCTTCTCAGTATACATGAGAAAATGATGGAGAAGTTAAGCAAA
GTATCTTTATGGCGTCTGTCAGTTCGCAGTGAGCTATACTGCAGGTGCTTTTGCATAAATGACAACAAGTATGCGGATTG
GCCACCTCTTCCAACTGTCCCTGATGAAATTGAACCTGATGTTTATGTTCCTGAGGTGGATATCCTGTCAGTCTTGGATG
TGCCTCCTGGCAAAATGGGGCGTGTTATTGGCAGAAAAGGATCATCAATAATGGAAGTGAAAGCATCTTGCAATGTTGAA
ATCCATATTGGTGGTGCAAAGGGACCTCCAGACAGGGTATTCATCATTGGACCAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11543.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis