Browse Element(s) Details


Os.21231.1.S1_at

Description gb:CB662792
DB_XREF= gi:29666517
DB_XREF=OSJNEd07C07.r
CLONE=OSJNEd07C07
TID=Os.21231.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.21231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0697C12.24 (P0697C12.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3861011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38570NANA1+21990045..21990706hypothetical protein
LOC_Os01g38580Os.37454.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580Os.40825.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580OsAffx.9447.1.S1_x_at1/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38590OsAffx.23555.1.S1_at11/111+21998535..21998816hypothetical protein
LOC_Os01g38600NANA1+22002399..22003015hypothetical protein
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g38620Os.11543.1.S1_a_at11/111+22025849..220310423'-5' exonuclease family protein, expressed
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21231.1.S1_at--706--2851Chr01:22014819..22014843 (25 bp)
AAGTCCCAGATCAGGGAGCTGCAAA
LOC_Os01g38610
Os.21231.1.S1_at--637--8991Chr01:22014800..22014824 (25 bp)
TGCAAACCCTAGACCGCCGGAACTA
LOC_Os01g38610
Os.21231.1.S1_at--969--10631Chr01:22014672..22014696 (25 bp)
TTCCCGGAAACCCTAGGATGCGGAG
LOC_Os01g38610
Os.21231.1.S1_at--894--5931Chr01:22014636..22014660 (25 bp)
GAGCAGCTGATCTAATCAATTTAGC
LOC_Os01g38610
Os.21231.1.S1_at--480--1531Chr01:22014614..22014638 (25 bp)
AGCTAGATAGATTGGAGACGACGAC
LOC_Os01g38610
Os.21231.1.S1_at--673--2731Chr01:22014538..22014562 (25 bp)
AAGCAACTGTTGCAATGTGTTGTCC
LOC_Os01g38610
Os.21231.1.S1_at--756--7411Chr01:22014522..22014546 (25 bp)
GTGTTGTCCAATGTGAGACCATCAT
LOC_Os01g38610
Os.21231.1.S1_at--1138--6551Chr01:22014491..22014515 (25 bp)
GATTCATCATTGTTAGGCATGGTGA
LOC_Os01g38610
Os.21231.1.S1_at--881--8271Chr01:22014476..22014500 (25 bp)
GGCATGGTGATTAACTAGCTACGAT
LOC_Os01g38610
Os.21231.1.S1_at--283--10572Chr04:30873714..30873733 (20 bp)
TTCTTCTCCTTGTCGTCATAATTTA
NONE
Os.21231.1.S1_at--391--7211Chr01:22014365..22014389 (25 bp)
GTCGTCATAATTTAGTTCTGATCAG
LOC_Os01g38610
Target Sequence 
AAGTCCCAGATCAGGGAGCTGCAAACCCTAGACCGCCGGAACTACCCGAACGCCGCCATGTCCATCAACACCGCCGCCGC
CACCACCATGGCGACATCCAGTTCACCAACCTACAACAACAGCAACGCCGCCATGCCAGCCTTCGCCTTCCCGGAAACCC
TAGGATGCGGAGGAGGAGGAGNNNTCGAGCAGCTGATCTAATCAATTTAGCTAGATAGATTGGAGACGACGACGACGACG
ACGACGACATGGAAGCCATGAAGGCGCATGGCGGCATGCATGCAAAGCAACTGTTGCAATGTGTTGTCCAATGTGAGACC
ATCATATGATAGATTCATCATTGTTAGGCATGGTGATTAACTAGCTACGATCATATCGATGGAATCATCATGCATGNCAT
GGACCCTATTAGCTAGNNTTTTTTTTTNCTCTTCTCNTTTTTCTTCTTCTTCTCCTTGTCGTCATAATTTAGTTCTGATC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis