Browse Element(s) Details


OsAffx.23555.1.S1_at

Description tigr:9629.m03664
TID=OsAffx.23555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified
LOC_Os01g38560NANA1+21988532..21989050expressed protein
LOC_Os01g38570NANA1+21990045..21990706hypothetical protein
LOC_Os01g38580Os.37454.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580Os.40825.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580OsAffx.9447.1.S1_x_at1/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38590OsAffx.23555.1.S1_at11/111+21998535..21998816hypothetical protein
LOC_Os01g38600NANA1+22002399..22003015hypothetical protein
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23555.1.S1_at--629--6931Chr01:21998565..21998589 (25 bp)
GTAGTCGGTGGATCTTGTCATGACG
LOC_Os01g38590
OsAffx.23555.1.S1_at--734--3971Chr01:21998570..21998594 (25 bp)
CGGTGGATCTTGTCATGACGGCAGT
LOC_Os01g38590
OsAffx.23555.1.S1_at--996--3511Chr01:21998583..21998607 (25 bp)
CATGACGGCAGTGGCCTCCACGATC
LOC_Os01g38590
OsAffx.23555.1.S1_at--1127--3331Chr01:21998601..21998625 (25 bp)
CACGATCCCACGTGGCAGCAAGGAA
LOC_Os01g38590
OsAffx.23555.1.S1_at--560--9311Chr01:21998606..21998630 (25 bp)
TCCCACGTGGCAGCAAGGAACCTGG
LOC_Os01g38590
OsAffx.23555.1.S1_at--854--5551Chr01:21998645..21998669 (25 bp)
GAAAGAAGCTGAGGTGGCCCCCGCT
LOC_Os01g38590
OsAffx.23555.1.S1_at--540--10671Chr01:21998701..21998725 (25 bp)
TTCCTGATCCCACCCAACAGTGGAG
LOC_Os01g38590
OsAffx.23555.1.S1_at--1152--1711Chr01:21998739..21998763 (25 bp)
ACCAGCACCATCATGTCCTCAATTT
LOC_Os01g38590
OsAffx.23555.1.S1_at--295--5091Chr01:21998743..21998767 (25 bp)
GCACCATCATGTCCTCAATTTGGCA
LOC_Os01g38590
OsAffx.23555.1.S1_at--21--3191Chr01:21998758..21998782 (25 bp)
CAATTTGGCATGGTAGTGCCTCCAT
LOC_Os01g38590
OsAffx.23555.1.S1_at--325--10851Chr01:21998762..21998786 (25 bp)
TTGGCATGGTAGTGCCTCCATTCGT
LOC_Os01g38590
Target Sequence 
GTAGTCGGTGGATCTTGTCATGACGGCAGTGGCCTCCACGATCCCACGTGGCAGCAAGGAACCTGGGGTCACAGTGGTGA
GAAAGAAGCTGAGGTGGCCCCCGCTGCTCGGCCTAAACCCTACCCCGATGGTGGCCTTCCTGATCCCACCCAACAGTGGA
GCCCTCCCGTACTCACCAGCACCATCATGTCCTCAATTTGGCATGGTAGTGCCTCCATTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis