Browse Element(s) Details


OsAffx.8963.2.S1_at

Description tigr:9629.m03670
TID=OsAffx.8963.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3864011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g38620Os.11543.1.S1_a_at11/111+22025849..220310423'-5' exonuclease family protein, expressed
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8963.2.S1_at--550--7731Chr01:22037581..22037605 (25 bp)
GGTGGACGGTGCAACAGGCGGCGAA
LOC_Os01g38640
OsAffx.8963.2.S1_at--389--1351Chr01:22037605..22037629 (25 bp)
AGAGATGGGTGACTGCCGGCGAGAA
LOC_Os01g38640
OsAffx.8963.2.S1_at--218--8071Chr01:22037681..22037705 (25 bp)
GGAGAAGGACTCGAAGCCCCCGCTG
LOC_Os01g38640
OsAffx.8963.2.S1_at--960--7531Chr01:22037715..22037739 (25 bp)
GTGGCGCTTCCCACTGCTCTGAATC
LOC_Os01g38640
OsAffx.8963.2.S1_at--489--3331Chr01:22037726..22037750 (25 bp)
CACTGCTCTGAATCAAACGAGAGAG
LOC_Os01g38640
OsAffx.8963.2.S1_at--730--831Chr01:22037787..22037811 (25 bp)
ATGGATGTGTCGAGCCGTCGGCGGA
LOC_Os01g38640
OsAffx.8963.2.S1_at--254--3631Chr01:22037857..22037881 (25 bp)
CTTCCAGCAGCGGTGGTTGTGGAAA
LOC_Os01g38640
OsAffx.8963.2.S1_at--36--8571Chr01:22037870..22037894 (25 bp)
TGGTTGTGGAAATAGCCGGAGTTCT
LOC_Os01g38640
OsAffx.8963.2.S1_at--1080--271Chr01:22037881..22037905 (25 bp)
ATAGCCGGAGTTCTGGATCGGACAA
LOC_Os01g38640
OsAffx.8963.2.S1_at--505--6711Chr01:22037890..22037914 (25 bp)
GTTCTGGATCGGACAAGGTTCTATT
LOC_Os01g38640
OsAffx.8963.2.S1_at--1015--8131Chr01:22037900..22037924 (25 bp)
GGACAAGGTTCTATTAAGCTTGCAT
LOC_Os01g38640
Target Sequence 
GGTGGACGGTGCAACAGGCGGCGAAGAGATGGGTGACTGCCGGCGAGAAGGATGGCGCAAAGGGCAGCGATCGGCAGGGA
GAAGGGGCGGCGACATTCGGGGAGAAGGACTCGAAGCCCCCGCTGCTGCCGGCCGTGGCGCTTCCCACTGCTCTGAATCA
AACGAGAGAGAGAATAGGAAAGATGGAGGAGAGGTTGTCGGGGGCGATGGATGTGTCGAGCCGTCGGCGGACGCGACGAG
GGCGGCCTCCTCCTCGGGGGTGGGGAGCAAGGAGGGCTTCCAGCAGCGGTGGTTGTGGAAATAGCCGGAGTTCTGGATCG
GACAAGGTTCTATTAAGCTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8963.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis