Browse Element(s) Details


OsAffx.21203.1.S1_at

Description gb:NM_193580.1
DB_XREF= gi:34914243
GEN=P0002B05.14
TID=OsAffx.21203.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0002B05.14 (P0002B05.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38620Os.11543.1.S1_a_at11/111+22025849..220310423'-5' exonuclease family protein, expressed
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21203.1.S1_at--303--9891Chr01:22043071..22043095 (25 bp)
TACTCCGTGGAAGGCAAGGTCAAGG
LOC_Os01g38660
OsAffx.21203.1.S1_at--398--7571Chr01:22043048..22043072 (25 bp)
GGGCTCCTTCCGCAAGAGCTTCAAG
LOC_Os01g38660
OsAffx.21203.1.S1_at--697--9531Chr01:22042995..22043019 (25 bp)
TCTATGGCTGGTCCTAGCTATTCTA
LOC_Os01g38660
OsAffx.21203.1.S1_at--1086--10211Chr01:22042977..22043001 (25 bp)
TATTCTACTAGCTACTCCCATCGAT
LOC_Os01g38660
OsAffx.21203.1.S1_at--472--551Chr01:22042875..22042899 (25 bp)
ATCCCCTGCATCAACTGTATGCGTA
LOC_Os01g38660
OsAffx.21203.1.S1_at--795--6911Chr01:22042859..22042883 (25 bp)
GTATGCGTAGTTTCATATCTTCTTC
LOC_Os01g38660
OsAffx.21203.1.S1_at--596--4311Chr01:22042830..22042854 (25 bp)
CCTTCGCTTCTCTTTTTCAATTTAT
LOC_Os01g38660
OsAffx.21203.1.S1_at--33--10211Chr01:22042808..22042832 (25 bp)
TATTTTCCTCTGGTTTTGGCTTTCT
LOC_Os01g38660
OsAffx.21203.1.S1_at--391--9571Chr01:22042784..22042808 (25 bp)
TCTTCTTGTTTTGATGCTCGATCAT
LOC_Os01g38660
OsAffx.21203.1.S1_at--245--6651Chr01:22042681..22042705 (25 bp)
GTTGTTGTTCTTGCTCAAAGTCTTG
LOC_Os01g38660
OsAffx.21203.1.S1_at--1093--8891Chr01:22042614..22042638 (25 bp)
TGAGTTGTTCCTATAGCATCTTGAA
LOC_Os01g38660
Target Sequence 
TACTCCGTGGAAGGCAAGGTCAAGGGCTCCTTCCGCAAGAGCTTCAAGTGGATCAAGGATCGCTACCTCCACCTCGTCTA
TGGCTGGTCCTAGCTATTCTACTAGCTACTCCCATCGATCGATCGATCTCTTCTTCTCTTTCAGAGTTCAGAGTTCAGAG
TTCAGACAGCAGCAACCAACCAACACCACATCGATCATCCCCTGCATCAACTGTATGCGTAGTTTCATATCTTCTTCTTC
GCCTTCGCTTCTCTTTTTCAATTTATTTTCCTCTGGTTTTGGCTTTCTCTTCTTGTTTTGATGCTCGATCATAGCAACGA
CTGAAGGTATATTACAAAAATTACAAATATATATAAAAAAAGCTTCTTCTTTTGTCATCTTCTTTTATTAGTTGTTGTTC
TTGCTCAAAGTCTTGAAGGTGGCAAAGCAATCAAAATCTGGTGTATATGTAGCTAAATGAGTTGTTCCTATAGCATCTTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis