Browse Element(s) Details


OsAffx.23559.1.S1_at

Description gb:NM_193585.1
DB_XREF= gi:34914253
GEN=P0002B05.19
TID=OsAffx.23559.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0002B05.19 (P0002B05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3871011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein
LOC_Os01g38720OsAffx.23560.1.S1_at11/111+22069156..22070902hypothetical protein
LOC_Os01g38730OsAffx.21201.1.S1_x_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730OsAffx.21201.1.S1_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.53217.1.S1_x_at4/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.43567.1.S1_x_at3/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.38172.1.S1_x_at2/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38740NANA1+22076910..22081295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g38750OsAffx.15200.3.S1_s_at11/111+22082037..22082757hypothetical protein
LOC_Os01g38750OsAffx.15200.2.S1_x_at3/111+22082037..22082757hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_s_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38780OsAffx.23563.2.S1_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38780OsAffx.23563.1.S1_s_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38790Os.14491.2.S1_x_at3/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38790Os.47463.1.S1_x_at2/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23559.1.S1_at--817--611Chr01:22064924..22064948 (25 bp)
ATGCTGGCAGCCTTCAAGACGGGCG
LOC_Os01g38710
OsAffx.23559.1.S1_at--702--711Chr01:22065034..22065058 (25 bp)
ATGATGAAGCATCAGCGACCGCCGC
LOC_Os01g38710
OsAffx.23559.1.S1_at--190--6331Chr01:22065061..22065085 (25 bp)
GATGCTGACGGTGAGTTCCAACCCC
LOC_Os01g38710
OsAffx.23559.1.S1_at--920--6031Chr01:22065095..22065119 (25 bp)
GAGATCGCGGCGACGGTGCACTACC
LOC_Os01g38710
OsAffx.23559.1.S1_at--346--4491Chr01:22065138..22065162 (25 bp)
GCCGGAGCTGTCGTTTTTGGCTCTT
LOC_Os01g38710
OsAffx.23559.1.S1_at--650--8471Chr01:22065155..22065179 (25 bp)
TGGCTCTTTTCTTTGCGGCGTGCGG
LOC_Os01g38710
OsAffx.23559.1.S1_at--899--8291Chr01:22065196..22065220 (25 bp)
GGCTTCACTGGATTTGGCACTGGCT
LOC_Os01g38710
OsAffx.23559.1.S1_at--543--7691Chr01:22065222..22065246 (25 bp)
GGGTCAAAAGGTGGCCATCGTGTTA
LOC_Os01g38710
OsAffx.23559.1.S1_at--792--491Chr01:22065238..22065262 (25 bp)
ATCGTGTTAGGATCCGCCGGTATCT
LOC_Os01g38710
OsAffx.23559.1.S1_at--302--4491Chr01:22065253..22065277 (25 bp)
GCCGGTATCTATGCACCTCTAGGAA
LOC_Os01g38710
OsAffx.23559.1.S1_at--396--5091Chr01:22065265..22065289 (25 bp)
GCACCTCTAGGAACAAGTATCGTGT
LOC_Os01g38710
Target Sequence 
ATGCTGGCAGCCTTCAAGACGGGCGGGTCGGCGAGTACTGGTACTTGGCCCCCATGTCGGCCTACTTCGACGACGAGCGG
CAGTACGAGGCGGCGGCCGCGTCGTCACTGATGATGAAGCATCAGCGACCGCCGCCCGATGCTGACGGTGAGTTCCAACC
CCGCCATGGCGGAGATCGCGGCGACGGTGCACTACCGGGCGATGAATTCGGGGCGCCGGAGCTGTCGTTTTTGGCTCTTT
TCTTTGCGGCGTGCGGCGCGGTTGTCGGCCTCGGCTTCACTGGATTTGGCACTGGCTGGGGTCAAAAGGTGGCCATCGTG
TTAGGATCCGCCGGTATCTATGCACCTCTAGGAACAAGTATCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis