Browse Element(s) Details


OsAffx.23563.1.S1_s_at

Description gb:NM_193589.1
DB_XREF= gi:34914261
GEN=P0002B05.23
TID=OsAffx.23563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0002B05.23 (P0002B05.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3878011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein
LOC_Os01g38720OsAffx.23560.1.S1_at11/111+22069156..22070902hypothetical protein
LOC_Os01g38730OsAffx.21201.1.S1_x_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730OsAffx.21201.1.S1_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.53217.1.S1_x_at4/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.43567.1.S1_x_at3/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.38172.1.S1_x_at2/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38740NANA1+22076910..22081295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g38750OsAffx.15200.3.S1_s_at11/111+22082037..22082757hypothetical protein
LOC_Os01g38750OsAffx.15200.2.S1_x_at3/111+22082037..22082757hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_s_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38780OsAffx.23563.2.S1_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38780OsAffx.23563.1.S1_s_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38790Os.14491.2.S1_x_at3/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38790Os.47463.1.S1_x_at2/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38800OsAffx.8939.1.S1_x_at5/111+22092609..22093063hypothetical protein
LOC_Os01g38800OsAffx.8939.1.S1_at4/111+22092609..22093063hypothetical protein
LOC_Os01g38800OsAffx.9036.1.S1_at1/111+22092609..22093063hypothetical protein
LOC_Os01g38810NANA1+22096317..22098553transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38820NANA1+22101400..22103896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38830NANA1+22106069..22107838transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23563.1.S1_s_at--858--3531Chr01:22088101..22088125 (25 bp)
CATCGAATCCGAAGGCAGATCAGGT
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--842--1271Chr01:22088085..22088109 (25 bp)
AGATCAGGTACCACCGGCTCCGACA
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--83--2091Chr01:22088063..22088087 (25 bp)
ACATTATCTTGTCCTGCGTGGTGTG
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--695--5611Chr01:22087944..22087968 (25 bp)
GACAAACGGTCCTGCATCTGCCGGA
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--618--3771Chr01:22087863..22087887 (25 bp)
GCCTTCCCAAAGACGGTGCCGGTGA
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--580--1951Chr01:22087829..22087853 (25 bp)
ACTGGCGGATCGGTAAATTCTGGTA
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--314--111Chr01:22087813..22087837 (25 bp)
ATTCTGGTACTACGCTGCCATGTCG
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--83--10631Chr01:22087782..22087806 (25 bp)
TTCGACGACAGGAACCACTACAAGG
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--393--9851Chr01:22087764..22087788 (25 bp)
TACAAGGAGACGAAGCGCGCGGTCC
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--943--4651Chr01:22087746..22087770 (25 bp)
GCGGTCCGCGATTTCCTTGAAAAGC
LOC_Os01g38780
OsAffx.23563.1.S1_s_at--977--8951Chr01:22087669..22087693 (25 bp)
TGAAAACTTGGAAGCGCAGCCGCCG
LOC_Os01g38780
Target Sequence 
CATCGAATCCGAAGGCAGATCAGGTACCACCGGCTCCGACATTATCTTGTCCTGCGTGGTGTGCACGGAGCCGCTCGAGT
GGGTGGCGGTCGGGCCCTGCGGCCACCGCGCCGTCTGCTCCATGTGCGTGGCCCGCGTCCGCGCCGGCCCGGACGCCGAC
AAACGGTCCTGCATCTGCCGGACGCGCTGCTACACCGTGGCCGTCACCAAGGCGGCGACGGCCGCTGACACCCTACACGC
CTTCCCAAAGACGGTGCCGGTGACCTCCCGAGACTGGCGGATCGGTAAATTCTGGTACTACGCTGCCATGTCGGCCTACT
TCGACGACAGGAACCACTACAAGGAGACGAAGCGCGCGGTCCGCGATTTCCTTGAAAAGCAGCGGGCGGCGCCGTCTCCG
CCGCCGCCGTGCCCGGACGACGATGTCACTGATGAAAACTTGGAAGCGCAGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23563.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis