Browse Element(s) Details


OsAffx.23560.1.S1_at

Description tigr:9629.m03678
TID=OsAffx.23560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3872011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein
LOC_Os01g38720OsAffx.23560.1.S1_at11/111+22069156..22070902hypothetical protein
LOC_Os01g38730OsAffx.21201.1.S1_x_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730OsAffx.21201.1.S1_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.53217.1.S1_x_at4/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.43567.1.S1_x_at3/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.38172.1.S1_x_at2/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38740NANA1+22076910..22081295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g38750OsAffx.15200.3.S1_s_at11/111+22082037..22082757hypothetical protein
LOC_Os01g38750OsAffx.15200.2.S1_x_at3/111+22082037..22082757hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_s_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38780OsAffx.23563.2.S1_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38780OsAffx.23563.1.S1_s_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38790Os.14491.2.S1_x_at3/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38790Os.47463.1.S1_x_at2/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38800OsAffx.8939.1.S1_x_at5/111+22092609..22093063hypothetical protein
LOC_Os01g38800OsAffx.8939.1.S1_at4/111+22092609..22093063hypothetical protein
LOC_Os01g38800OsAffx.9036.1.S1_at1/111+22092609..22093063hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23560.1.S1_at--899--6351Chr01:22070512..22070536 (25 bp)
GATGCCGGCTGCCACCCAAGACGGA
LOC_Os01g38720
OsAffx.23560.1.S1_at--996--7251Chr01:22070638..22070662 (25 bp)
GTGCCTGAAACAGCGGCCGGCGGGT
LOC_Os01g38720
OsAffx.23560.1.S1_at--420--5731Chr01:22070675..22070699 (25 bp)
GACGGTGAACGGGACCAACGATACG
LOC_Os01g38720
OsAffx.23560.1.S1_at--890--7631Chr01:22070685..22070709 (25 bp)
GGGACCAACGATACGGGACGGCACA
LOC_Os01g38720
OsAffx.23560.1.S1_at--699--6471Chr01:22070694..22070718 (25 bp)
GATACGGGACGGCACAGTTCTTGAA
LOC_Os01g38720
OsAffx.23560.1.S1_at--795--1931Chr01:22070702..22070726 (25 bp)
ACGGCACAGTTCTTGAAGTATAGCT
LOC_Os01g38720
OsAffx.23560.1.S1_at--807--10731Chr01:22070714..22070738 (25 bp)
TTGAAGTATAGCTTCTTCGCGGCGC
LOC_Os01g38720
OsAffx.23560.1.S1_at--710--9571Chr01:22070763..22070787 (25 bp)
TCTTCGCCGTGGATGCCCCAGGTTG
LOC_Os01g38720
OsAffx.23560.1.S1_at--241--7591Chr01:22070800..22070824 (25 bp)
GGGCATCGTTGCAGGATCCGCAGCT
LOC_Os01g38720
OsAffx.23560.1.S1_at--453--5071Chr01:22070819..22070843 (25 bp)
GCAGCTCTCTCGGTTGCAGTAGGAA
LOC_Os01g38720
OsAffx.23560.1.S1_at--82--3771Chr01:22070823..22070847 (25 bp)
CTCTCTCGGTTGCAGTAGGAAGTGT
LOC_Os01g38720
Target Sequence 
GATGCCGGCTGCCACCCAAGACGGACAGGTCGGCGAGTACTGGTACTGCGCCGCCATGTCGGCCTACTTCGACGACGAGC
GGCAGTACGAGGCGACGGCCAAGGCGGAGGCGGCGGCCGCGGCCGGGTGCCTGAAACAGCGGCCGGCGGGTGCGGACGAC
GACGACGGTGAACGGGACCAACGATACGGGACGGCACAGTTCTTGAAGTATAGCTTCTTCGCGGCGCTGTTCGGCGTGTG
CATCGGCTTCGTCTTCGCCGTGGATGCCCCAGGTTGGGGCGGCAGGGTGGGCATCGTTGCAGGATCCGCAGCTCTCTCGG
TTGCAGTAGGAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis