Browse Element(s) Details


OsAffx.23558.2.S1_x_at

Description tigr:9629.m03675
TID=OsAffx.23558.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38640OsAffx.8963.2.S1_at11/111+22037544..22037954hypothetical protein
LOC_Os01g38650Os.23623.1.A1_at11/111+22040578..22041801expressed protein
LOC_Os01g38650OsAffx.1884.1.S1_x_at1/111+22040578..22041801expressed protein
LOC_Os01g38660OsAffx.21203.1.S1_at11/111+22042570..22043452expressed protein
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein
LOC_Os01g38720OsAffx.23560.1.S1_at11/111+22069156..22070902hypothetical protein
LOC_Os01g38730OsAffx.21201.1.S1_x_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730OsAffx.21201.1.S1_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.53217.1.S1_x_at4/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.43567.1.S1_x_at3/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.38172.1.S1_x_at2/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38740NANA1+22076910..22081295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g38750OsAffx.15200.3.S1_s_at11/111+22082037..22082757hypothetical protein
LOC_Os01g38750OsAffx.15200.2.S1_x_at3/111+22082037..22082757hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_s_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_at11/111+22083832..22084551hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23558.2.S1_x_at--115--2491Chr01:22060430..22060454 (25 bp)
AACAGCTACCAAGAGTGGCGGGCGC
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--194--9931Chr01:22060463..22060487 (25 bp)
TACTGGTACTGCACCACCATGTTGG
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--1003--711Chr01:22060481..22060505 (25 bp)
ATGTTGGCCTACTTCGACGACGTGG
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--673--5091Chr01:22060602..22060626 (25 bp)
GCACGCTGAGCAGCTGCGTAGACGT
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--929--9131Chr01:22060616..22060640 (25 bp)
TGCGTAGACGTGTTCAGGTTCCTGC
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--880--9631Chr01:22060629..22060653 (25 bp)
TCAGGTTCCTGCTAATTGTGGCCAT
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--921--3171Chr01:22060642..22060666 (25 bp)
AATTGTGGCCATCTTTGCGCTGTTC
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--479--3971Chr01:22060684..22060708 (25 bp)
CGTCTTTTCGTCACTAACAGCGGGA
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--1135--931Chr01:22060708..22060732 (25 bp)
AGGAAGAGCCACACCGGGTGACAAT
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--753--7711Chr01:22060723..22060747 (25 bp)
GGGTGACAATCTGGCCTTCATTTCA
LOC_Os01g38690
OsAffx.23558.2.S1_x_at--15--10551Chr01:22060739..22060763 (25 bp)
TTCATTTCAGCATGCGCCGCGGTCT
LOC_Os01g38690
Target Sequence 
AACAGCTACCAAGAGTGGCGGGCGCGGGGGTACTACTGGTACTGCACCACCATGTTGGCCTACTTCGACGACGTGGAGCA
GTACAGGGCGACGAGGGCGATCGCGCGCGGCGAGGTTAAGGGGGGCGCCGCCGTGGACGTGGACGGGAACGACGGCGGCG
GCGGTGGCCGCCGCACGCTGAGCAGCTGCGTAGACGTGTTCAGGTTCCTGCTAATTGTGGCCATCTTTGCGCTGTTCGGC
GTGCTGTTTGGCTCCGTCTTTTCGTCACTAACAGCGGGAGGAAGAGCCACACCGGGTGACAATCTGGCCTTCATTTCAGC
ATGCGCCGCGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23558.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis