Browse Element(s) Details


OsAffx.21201.1.S1_x_at

Description gb:NM_193586.1
DB_XREF= gi:34914255
GEN=P0002B05.20
TID=OsAffx.21201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0002B05.20 (P0002B05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3873011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38670Os.35004.1.S1_x_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.35004.1.S1_at11/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670OsAffx.7485.1.S1_x_at6/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38670Os.47306.1.S1_x_at1/111+22046722..22048865Sugar carrier protein C, putative, expressed
LOC_Os01g38680Os.47306.1.S1_x_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.47306.1.S1_at11/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680Os.35004.1.S1_x_at2/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38680OsAffx.7485.1.S1_x_at1/111+22050855..22052710Glucose transporter, putative, expressed
LOC_Os01g38690OsAffx.23558.2.S1_x_at11/111+22057236..22060798hypothetical protein
LOC_Os01g38700OsAffx.11378.1.S1_at11/111+22062915..22064173hypothetical protein
LOC_Os01g38710OsAffx.23559.1.S1_at11/111+22064488..22065321hypothetical protein
LOC_Os01g38720OsAffx.23560.1.S1_at11/111+22069156..22070902hypothetical protein
LOC_Os01g38730OsAffx.21201.1.S1_x_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730OsAffx.21201.1.S1_at11/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.53217.1.S1_x_at4/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.43567.1.S1_x_at3/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38730Os.38172.1.S1_x_at2/111+22073186..22074857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38740NANA1+22076910..22081295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g38750OsAffx.15200.3.S1_s_at11/111+22082037..22082757hypothetical protein
LOC_Os01g38750OsAffx.15200.2.S1_x_at3/111+22082037..22082757hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_s_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38760OsAffx.15200.5.S1_at11/111+22083832..22084551hypothetical protein
LOC_Os01g38780OsAffx.23563.2.S1_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38780OsAffx.23563.1.S1_s_at11/111+22086781..22088271hypothetical protein
LOC_Os01g38790Os.14491.2.S1_x_at3/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38790Os.47463.1.S1_x_at2/111+22089008..22090444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g38800OsAffx.8939.1.S1_x_at5/111+22092609..22093063hypothetical protein
LOC_Os01g38800OsAffx.8939.1.S1_at4/111+22092609..22093063hypothetical protein
LOC_Os01g38800OsAffx.9036.1.S1_at1/111+22092609..22093063hypothetical protein
LOC_Os01g38810NANA1+22096317..22098553transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21201.1.S1_x_at--20--6151Chr01:22073249..22073273 (25 bp)
GAGGTGACTGACTCGAAGACGGACA
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--27--8951Chr01:22073253..22073277 (25 bp)
TGACTGACTCGAAGACGGACAGCAG
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--928--1991Chr01:22073259..22073283 (25 bp)
ACTCGAAGACGGACAGCAGCACCCG
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--390--4031Chr01:22073286..22073310 (25 bp)
CGTTGAGGCGTCATCGCCTACTCGA
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--434--10771Chr01:22073288..22073312 (25 bp)
TTGAGGCGTCATCGCCTACTCGACG
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--327--7131Chr01:22073295..22073319 (25 bp)
GTCATCGCCTACTCGACGAGGAGGA
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--789--971Chr01:22073325..22073349 (25 bp)
AGGAGACGACACCTGGTGACAAGAA
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--1058--5611Chr01:22073332..22073356 (25 bp)
GACACCTGGTGACAAGAAGGACACG
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--1098--7351Chr01:22073340..22073364 (25 bp)
GTGACAAGAAGGACACGACTGCTCC
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--693--3231Chr01:22073344..22073368 (25 bp)
CAAGAAGGACACGACTGCTCCTGGT
LOC_Os01g38730
OsAffx.21201.1.S1_x_at--995--5292Chr01:22073347..22073371 (25 bp)
GAAGGACACGACTGCTCCTGGTGAC
LOC_Os01g38730
Target Sequence 
GAGGTGACTGACTCGAAGACGGACAGCAGCACCCGCCCGTTGAGGCGTCATCGCCTACTCGACGAGGAGGAGGAGGAGGA
GACGACACCTGGTGACAAGAAGGACACGACTGCTCCTGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21201.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis