Browse Element(s) Details


Os.26146.1.S1_at

Description gb:BI813348
DB_XREF= gi:16579253
DB_XREF=K003C01
CLONE=K003C01
TID=Os.26146.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26146 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178064.1 (A.thaliana) ent-kaurene synthase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g361406/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36110Os.19393.1.S1_at11/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36110Os.5479.1.S1_x_at1/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36120OsAffx.12369.1.S1_at11/112+21736990..21737338hypothetical protein
LOC_Os02g36120OsAffx.24912.1.S1_at1/112+21736990..21737338hypothetical protein
LOC_Os02g36130OsAffx.30582.1.S1_s_at10/112+21740011..21741181hypothetical protein
LOC_Os02g36140Os.21776.1.S1_at10/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36140Os.26146.1.S1_at6/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36150Os.23517.1.A1_at11/112+21782264..21785353Cytochrome P450 family protein, expressed
LOC_Os02g36150Os.23518.1.A1_at1/112+21782264..21785353Cytochrome P450 family protein, expressed
LOC_Os02g36160NANA2+21789415..21789867transposon protein, putative, unclassified
LOC_Os02g36170NANA2+21791799..21792944retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26146.1.S1_at--231--2971NONE
AATGGGATCCAAGGAACTCCAGGCC
NONE
Os.26146.1.S1_at--487--8411NONE
GGCCGTGAAGAGGTTCTTGCCTTGA
NONE
Os.26146.1.S1_at--300--1331NONE
AGAGGTTCTTGCCTTGAATTTGAAA
NONE
Os.26146.1.S1_at--434--5191NONE
GAATTTGAAATTCCCACTTTGGCCA
NONE
Os.26146.1.S1_at--3--2051Chr02:21764871..21764893 (23 bp)
ACTTTGGCCATTTCGCTTCAGACAG
LOC_Os02g36140
Os.26146.1.S1_at--952--10291Chr02:21764879..21764903 (25 bp)
TTTCGCTTCAGACAGCTCAGTTTGT
LOC_Os02g36140
Os.26146.1.S1_at--40--3431Chr02:21764887..21764911 (25 bp)
CAGACAGCTCAGTTTGTGTTTAAAT
LOC_Os02g36140
Os.26146.1.S1_at--1013--5951Chr02:21764912..21764936 (25 bp)
GAGAATTTCGCTTTTGTAATTTCAG
LOC_Os02g36140
Os.26146.1.S1_at--144--10791Chr02:21764925..21764949 (25 bp)
TTGTAATTTCAGATCGAGTTTGCTC
LOC_Os02g36140
Os.26146.1.S1_at--1093--6771NONE
GTCTAGTCCACCAGGAAGAACCTTG
NONE
Os.26146.1.S1_at--683--6111Chr02:21765042..21765066 (25 bp)
GAGTGCATGTAAGGCTTTCATCGAA
LOC_Os02g36140
Target Sequence 
AATGGGATCCAAGGAACTCCAGGCCGTGAAGAGGTTCTTGCCTTGAATTTGAAATTCCCACTTTGGCCATTTCGCTTCAG
ACAGCTCAGTTTGTGTTTAAATGAGAATTTCGCTTTTGTAATTTCAGATCGAGTTTGCTCTGAAGTATCCCTTCTACAGC
ACATTGGAACGTCTAGTCCACCAGGAAGAACCTTGTGCTTTTCGACGCTAAGGGCTCCCAGATGCTGAAAACAGAGTGCA
TGTAAGGCTTTCATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis