Browse Element(s) Details


Os.26411.1.A1_at

Description gb:AY224427.1
DB_XREF= gi:29367346
TID=Os.26411.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26411 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 20474 receptor kinase-like protein mRNA, complete cds.
PROD=receptor kinase-like protein
FL= gb:AY224427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2871011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28700OsAffx.5969.1.S1_at10/118+17405588..17408068DnaJ domain containing protein, expressed
LOC_Os08g28710Os.26411.2.A1_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28710Os.26411.1.A1_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28710Os.26411.2.A1_x_at11/118+17425619..17427319Protein kinase domain containing protein, expressed
LOC_Os08g28720NANA8+17432161..17433393retrotransposon, putative, centromere-specific
LOC_Os08g28730Os.9547.1.S1_at11/118+17437063..17443560UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os08g28730Os.55530.1.S1_at1/118+17437063..17443560UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os08g28740NANA8+17448264..17450288expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26411.1.A1_at--200--9451Chr08:17426180..17426204 (25 bp)
TCGGACTTCGGCTTGGCGGTAAGCT
LOC_Os08g28710
Os.26411.1.A1_at--63--6131Chr08:17426144..17426168 (25 bp)
GAGTGTACGGCCGAGATGCCTATCT
LOC_Os08g28710
Os.26411.1.A1_at--1049--4291Chr08:17426126..17426150 (25 bp)
CCTATCTTAGGCACGTTCGAGTACA
LOC_Os08g28710
Os.26411.1.A1_at--1078--831Chr08:17426102..17426126 (25 bp)
ATGGACCCCGAGTACCTGAGCACGG
LOC_Os08g28710
Os.26411.1.A1_at--689--3931Chr08:17426043..17426067 (25 bp)
CGGCGTCGTGATGCTAGAGCTTCTG
LOC_Os08g28710
Os.26411.1.A1_at--340--6651Chr08:17425979..17426003 (25 bp)
GTTGTTGCCACAAGCTTGGTTGCAT
LOC_Os08g28710
Os.26411.1.A1_at--1011--10731Chr08:17425960..17425984 (25 bp)
TTGCATCCGTGCTGCCAAACATGGA
LOC_Os08g28710
Os.26411.1.A1_at--1117--3431Chr08:17425843..17425867 (25 bp)
CAGTACGCTGCGTGCATTCACAGGG
LOC_Os08g28710
Os.26411.1.A1_at--74--4551Chr08:17425806..17425830 (25 bp)
GCCCATGACGGAGGTCGTAGCCAAC
LOC_Os08g28710
Os.26411.1.A1_at--61--4091Chr08:17425767..17425791 (25 bp)
CGACCTCCTTAGTCTCGATGAGTAG
LOC_Os08g28710
Os.26411.1.A1_at--430--7691Chr08:17425741..17425765 (25 bp)
GGGTAGCTAGCTCGGTAATTGATCT
LOC_Os08g28710
Target Sequence 
TCGGACTTCGGCTTGGCGGTAAGCTGCGACGAGGTAGAGTGTACGGCCGAGATGCCTATCTTAGGCACGTTCGAGTACAT
GGACCCCGAGTACCTGAGCACGGGGAACCTGACGCCGGCGAGCGACGTGTACAGCTTCGGCGTCGTGATGCTAGAGCTTC
TGACGGGGAAGAAGGCAATTCACGACGAGAAGCACGGCGCCGTTGTTGCCACAAGCTTGGTTGCATCCGTGCTGCCAAAC
ATGGAGGCTGGGGATTTGATGAAGGAGCTCGATAGGGGCCCAGGGCTGAAGCCAACGCCAAGGCAGCTAAAGGCGACAGA
GGTGGTGGCGCGGACGGCAGTACGCTGCGTGCATTCACAGGGGAAGGAGCGTCCGCCCATGACGGAGGTCGTAGCCAACC
TCCAGGAGGCGCTCGACCTCCTTAGTCTCGATGAGTAGAGGGTAGCTAGCTCGGTAATTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26411.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis