Browse Element(s) Details


Os.26715.1.S1_at

Description gb:AK071518.1
DB_XREF= gi:32981541
TID=Os.26715.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101M15, full insert sequence.
FL= gb:AK071518.1 gb:AK104048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1099011/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10950OsAffx.15364.2.S1_x_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950OsAffx.15364.2.S1_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950Os.54289.1.S1_x_at1/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960OsAffx.15364.1.S1_at11/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960OsAffx.15364.2.S1_x_at1/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10970Os.53163.1.S1_at11/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970OsAffx.15364.2.S1_x_at1/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980OsAffx.4795.1.S1_at11/116+5733508..5735154Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10990Os.26715.1.S1_at11/116+5744189..5746210dnaK protein, expressed
LOC_Os06g11000OsAffx.27560.1.S1_at11/116+5756270..5757844hypothetical protein
LOC_Os06g11010OsAffx.27561.1.S1_at11/116+5758686..5760519Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26715.1.S1_at--78--6251Chr06:5744741..5744765 (25 bp)
GATGGACTCGCTTCTGGACGACGGC
LOC_Os06g10990
Os.26715.1.S1_at--720--2631Chr06:5744671..5744695 (25 bp)
AACCACGACCTGTTGGACAGAGCCA
LOC_Os06g10990
Os.26715.1.S1_at--481--4371Chr06:5744559..5744583 (25 bp)
CCAAGGTTCGTCAGCTCGTCAAGGA
LOC_Os06g10990
Os.26715.1.S1_at--1013--2911Chr06:5744539..5744563 (25 bp)
AAGGACTACTTCAATGGCAACGGCA
LOC_Os06g10990
Os.26715.1.S1_at--850--5091Chr06:5744507..5744531 (25 bp)
GCACCCAAACAGTCGCGGTTGCAAG
LOC_Os06g10990
Os.26715.1.S1_at--9--8671Chr06:5744471..5744495 (25 bp)
TGTGGAACCAGAGGATGCCGTGCTT
LOC_Os06g10990
Os.26715.1.S1_at--667--471Chr06:5744365..5744389 (25 bp)
ATCTGATCTCTCTCGTGTAGCTTAT
LOC_Os06g10990
Os.26715.1.S1_at--547--7771Chr06:5744312..5744336 (25 bp)
GGTGCGCTTCAGGTTGGAGCTTACA
LOC_Os06g10990
Os.26715.1.S1_at--12--3471Chr06:5744289..5744313 (25 bp)
CAGTGAGTGTGGGTCATTCTTGCCT
LOC_Os06g10990
Os.26715.1.S1_at--1054--10691Chr06:5744270..5744294 (25 bp)
TTGCCTTCTGGAGTCGTTTTACTAG
LOC_Os06g10990
Os.26715.1.S1_at--760--10531Chr06:5744195..5744219 (25 bp)
TTCTGAATGAGACACCTCCTTTTGT
LOC_Os06g10990
Target Sequence 
GATGGACTCGCTTCTGGACGACGGCGCGGTCTTCTCCGCGACGCTGACGCGGGCCAAGTTCGAGGAGCTCAACCACGACC
TGTTGGACAGAGCCATGGCGCTGGTGAAGGAGGTGGTGGTGACGACGGGAGGAGTGGAGGTGGTGGACGAGGTTCTTGTC
GTCGGCGGCAGCGCGAGGATTCCCAAGGTTCGTCAGCTCGTCAAGGACTACTTCAATGGCAACGGCAATGGCACGCACCC
AAACAGTCGCGGTTGCAAGGGGCCGGTGGATGTGGAACCAGAGGATGCCGTGCTTCATGGCGCCGCGCTTCTTTCCCGTC
CTCTACCTGTTGCAGAGGGAACAGCAGCAGCTCGGTCCATCGNNNNNNNNNNNNNGTTCCGTNGGAGGCATCTGATCTCT
CTCGTGTAGCTTATGCTTTGGCTACGACGATGNACCAAGGTGGGTGCGCTTCAGGTTGGAGCTTACAGTGAGTGTGGGTC
ATTCTTGCCTTCTGGAGTCGTTTTACTAGTTGTAACATGTAGCACTAACCACTAAATAATTGNTCATTTCCCTGTGAAAT
TCTGAATGAGACACCTCCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis