Browse Element(s) Details


Os.26754.1.S1_at

Description gb:AK070839.1
DB_XREF= gi:32980862
TID=Os.26754.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073G11, full insert sequence.
FL= gb:AK070839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2917011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29130NANA3+16498210..16501932retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29140NANA3+16503133..16504786hypothetical protein
LOC_Os03g29150Os.27964.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29150OsAffx.25272.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29170Os.26754.1.S1_at11/113+16526730..16532581NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29180Os.12950.1.S1_at10/113+16534924..16540918LOC496049 protein, putative, expressed
LOC_Os03g29190Os.6125.1.S1_at11/113+16544957..16550702PDI, putative, expressed
LOC_Os03g29194NANA3+16554364..16556631hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006694biological_processsteroid biosynthesis
GO:0003854molecular_function3-beta-hydroxy-delta5-steroid dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26754.1.S1_at--521--3591Chr03:16531537..16531561 (25 bp)
CATTCATGGGATTCTGCCTGCAAAT
LOC_Os03g29170
Os.26754.1.S1_at--155--4811Chr03:16531706..16531730 (25 bp)
GCTCGAGCCTTCAAATTTTCACATC
LOC_Os03g29170
Os.26754.1.S1_at--963--7511Chr03:16531737..16531761 (25 bp)
GTGGAGGCGCATCATATTGCTCATT
LOC_Os03g29170
Os.26754.1.S1_at--851--10711Chr03:16531753..16531777 (25 bp)
TTGCTCATTCAGTCAGCTCAACATG
LOC_Os03g29170
Os.26754.1.S1_at--327--2491Chr03:16531954..16531977 (24 bp)
AAGGTGGTATTCTCCCTATTGGTTG
LOC_Os03g29170
Os.26754.1.S1_at--1027--7911Chr03:16531973..16531997 (25 bp)
GGTTGTGAGCATCCTTAGTTCCATG
LOC_Os03g29170
Os.26754.1.S1_at--519--10051Chr03:16531988..16532012 (25 bp)
TAGTTCCATGTCTTCGCAATCTGCA
LOC_Os03g29170
Os.26754.1.S1_at--164--10571Chr03:16532120..16532144 (25 bp)
TTCTATGGCTTTCCTAGGCTTCAAA
LOC_Os03g29170
Os.26754.1.S1_at--590--3011Chr03:16532187..16532211 (25 bp)
AATGCATGCTCGGTTGTTACGCACT
LOC_Os03g29170
Os.26754.1.S1_at--127--6691Chr03:16532202..16532226 (25 bp)
GTTACGCACTTTGTTCAGGGCCAGA
LOC_Os03g29170
Os.26754.1.S1_at--257--1691Chr03:16532292..16532316 (25 bp)
AGCCATTGCTAGTTTTTCTTCCGAG
LOC_Os03g29170
Target Sequence 
CATTCATGGGATTCTGCCTGCAAATGTGTTTGGACACAAGGTTGAGAAGCTCGAGCCTTCAAATTTTCACATCACACAGG
TGGAGGCGCATCATATTGCTCATTCAGTCAGCTCAACATGGAACTCTTTAGTTGGTGTGCTAAAATCTTTATGCAGAGGA
AATGATTGGCCACTATTTTTCAAGGTGGTATTCTCCCTATTGGTTGTGAGCATCCTTAGTTCCATGTCTTCGCAATCTGC
ATTTAAAATAGGTATTTCTATGGCTTTCCTAGGCTTCAAAGCCTATGAGAAATGGGAGGACACCATCGATGATTTGGTGG
GTAATGCATGCTCGGTTGTTACGCACTTTGTTCAGGGCCAGAAATCCTCAAGGCAGAAGCATGCAGATAATTGAATGGCA
TCATTTAGTGAGGTTAACTTCAATTTCAGCCATTGCTAGTTTTTCTTCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis