Browse Element(s) Details


OsAffx.25272.1.S1_at

Description tigr:9631.m02839
TID=OsAffx.25272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative 3-beta hydroxysteroid dehydrogenaseisomerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2915011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29100OsAffx.31069.5.S1_at3/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100OsAffx.31069.3.S1_at3/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100OsAffx.31069.5.S1_x_at2/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100Os.53479.1.S1_x_at2/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29100OsAffx.31069.2.S1_x_at1/113+16477887..16481348retrotransposon protein, putative, unclassified
LOC_Os03g29110NANA3+16486614..16488056transposon protein, putative, unclassified
LOC_Os03g29120NANA3+16491037..16494077retrotransposon protein, putative, unclassified
LOC_Os03g29130NANA3+16498210..16501932retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29140NANA3+16503133..16504786hypothetical protein
LOC_Os03g29150Os.27964.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29150OsAffx.25272.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29170Os.26754.1.S1_at11/113+16526730..16532581NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29180Os.12950.1.S1_at10/113+16534924..16540918LOC496049 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006694biological_processsteroid biosynthesis
GO:0003854molecular_function3-beta-hydroxy-delta5-steroid dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25272.1.S1_at--272--8011Chr03:16515480..16515504 (25 bp)
GGAGGCAAGGTATATCACTATTATT
LOC_Os03g29150
OsAffx.25272.1.S1_at--405--5211Chr03:16515505..16515529 (25 bp)
GAATTGCACTAGTTTCACTGCTGAT
LOC_Os03g29150
OsAffx.25272.1.S1_at--434--3331Chr03:16515520..16515544 (25 bp)
CACTGCTGATAAATTTTCATGGTGC
LOC_Os03g29150
OsAffx.25272.1.S1_at--364--3511Chr03:16515537..16515561 (25 bp)
CATGGTGCATTTAACTTTCTCTAGG
LOC_Os03g29150
OsAffx.25272.1.S1_at--964--3671Chr03:16515551..16515575 (25 bp)
CTTTCTCTAGGCTTACTTCATAACT
LOC_Os03g29150
OsAffx.25272.1.S1_at--1089--8071Chr03:16515581..16515605 (25 bp)
GGAGCCTATGAACTTGTGGGACTTT
LOC_Os03g29150
OsAffx.25272.1.S1_at--329--7491Chr03:16515596..16515620 (25 bp)
GTGGGACTTTCTTTATATGCTTTTA
LOC_Os03g29150
OsAffx.25272.1.S1_at--882--2891Chr03:16515638..16515662 (25 bp)
AAGGTGATGCTTCTTCCTAGATATC
LOC_Os03g29150
OsAffx.25272.1.S1_at--1074--10451Chr03:16515687..16515711 (25 bp)
TTAGCTTCTAAAATATGCAGTCTCC
LOC_Os03g29150
OsAffx.25272.1.S1_at--416--651Chr03:16515701..16515725 (25 bp)
ATGCAGTCTCCATACACTCTAATTG
LOC_Os03g29150
OsAffx.25272.1.S1_at--456--291Chr03:16515761..16515785 (25 bp)
ATAGTTGTCTATGGATGTATTGATC
LOC_Os03g29150
Target Sequence 
GGAGGCAAGGTATATCACTATTATTGAATTGCACTAGTTTCACTGCTGATAAATTTTCATGGTGCATTTAACTTTCTCTA
GGCTTACTTCATAACTAATATGGAGCCTATGAACTTGTGGGACTTTCTTTATATGCTTTTAGAAGAACTTGGATATAAAA
GGTGATGCTTCTTCCTAGATATCATACATATAACCTAAAGTATATTCTTAGCTTCTAAAATATGCAGTCTCCATACACTC
TAATTGATGTAATATTGAAGTTGGCAATATAAATTAGAAGGATAGTTGTCTATGGATGTATTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis