Browse Element(s) Details


Os.26855.1.A1_at

Description gb:CB645754
DB_XREF= gi:29640747
DB_XREF=OSJNEb07L01.r
CLONE=OSJNEb07L01
TID=Os.26855.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.26855 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567467.1 (A.thaliana) F-box protein family, AtFBL4 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4216010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42130NANA11+24870585..24873821transposon protein, putative, unclassified
LOC_Os11g42140NANA11+24874452..24880610transposon protein, putative, unclassified
LOC_Os11g42150OsAffx.7382.1.S1_at11/1111+24881400..24883829hypothetical protein
LOC_Os11g42160Os.26855.1.A1_at10/1111+24892696..24898109Leucine Rich Repeat family protein, expressed
LOC_Os11g42170OsAffx.19327.1.S1_s_at11/1111+24898612..24899505expressed protein
LOC_Os11g42170OsAffx.19327.1.S1_at11/1111+24898612..24899505expressed protein
LOC_Os11g42180Os.14491.2.S1_x_at2/1111+24904733..24907677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g42200Os.54291.1.S1_at10/1111+24922346..24924690Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26855.1.A1_at--37--6471Chr11:24896840..24896864 (25 bp)
GATAATGGGCTCACTGCAATTGCAA
LOC_Os11g42160
Os.26855.1.A1_at--698--2791Chr11:24896863..24896887 (25 bp)
AAGAGGATGCCCTGATCTGGTCTAC
LOC_Os11g42160
Os.26855.1.A1_at--190--231NONE
ATATAAGTGTTCTCCGGTCCATAGG
NONE
Os.26855.1.A1_at--857--1271Chr11:24897612..24897636 (25 bp)
AGATCGGTGAAGGTTGCTCGCAGCT
LOC_Os11g42160
Os.26855.1.A1_at--421--4891Chr11:24897634..24897658 (25 bp)
GCTTAAAGATATCGCGCTGTCCCAC
LOC_Os11g42160
Os.26855.1.A1_at--195--1031Chr11:24897666..24897690 (25 bp)
AGGTCACTGATGTTGGTCTAGGCCA
LOC_Os11g42160
Os.26855.1.A1_at--638--5231Chr11:24897759..24897783 (25 bp)
GAATAGCGACTATCGTCTCGGGCTG
LOC_Os11g42160
Os.26855.1.A1_at--755--4151Chr11:24897784..24897808 (25 bp)
CCCCAAGTTGAAGAAGCTCCTCGTT
LOC_Os11g42160
Os.26855.1.A1_at--801--1331Chr11:24897842..24897866 (25 bp)
AGAGCAGGATCAGTCTTGTCGTTCC
LOC_Os11g42160
Os.26855.1.A1_at--403--9471Chr11:24897867..24897891 (25 bp)
TCTGCACCGGGCTTTAACCTGAAAA
LOC_Os11g42160
Os.26855.1.A1_at--723--5091Chr11:24897956..24897980 (25 bp)
GCACCCTGTGCCATAGCTTGTTTAG
LOC_Os11g42160
Target Sequence 
GATAATGGGCTCACTGCAATTGCAAGAGGATGCCCTGATCTGGTCTACTTGGATATAAGTGTTCTCCGGTCCATAGGAGA
CATGGCGCTTGCGGAGATCGGTGAAGGTTGCTCGCAGCTTAAAGATATCGCGCTGTCCCACTGTCCAGAGGTCACTGATG
TTGGTCTAGGCCACCTTGTCAGGGGCTGCCTGCCGCTGCAGTCATGCCAGATGGTGTACTGCAGGCGAGTGAGCAGCACA
GGAATAGCGACTATCGTCTCGGGCTGCCCCAAGTTGAAGAAGCTCCTCGTTGAGGAGTGGAAGGTGAGCGAGAGGACGCG
GCGCAGAGCAGGATCAGTCTTGTCGTTCCTCTGCACCGGGCTTTAACCTGAAAATGGNAAAAAAAATCTGTGTTTTAACA
ACTCTGTTGTTGGTCAGAAATCGTGCTCATGAGTTGCTGCACCCTGTGCCATAGCTTGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26855.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis