Browse Element(s) Details


Os.27476.1.A1_at

Description gb:CB629975
DB_XREF= gi:29624964
DB_XREF=OSIIEb06K03.r
CLONE=OSIIEb06K03
TID=Os.27476.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.27476 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_563716.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2546010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25450Os.26478.1.S1_at11/117+14561567..14568313histone-lysine N-methyltransferase, H3 lysine-9 specific 2, putative, expressed
LOC_Os07g25460OsAffx.28578.1.S1_at11/117+14572842..14574232hypothetical protein
LOC_Os07g25460Os.27476.1.A1_at10/117+14572842..14574232hypothetical protein
LOC_Os07g25470NANA7+14576642..14578288KE03 protein, putative, expressed
LOC_Os07g25480OsAffx.5434.1.S1_at11/117+14592890..14593169hypothetical protein
LOC_Os07g25484NANA7+14598828..14599110hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27476.1.A1_at--478--3011Chr07:14573374..14573398 (25 bp)
AATGCGGCGGCATAGATAGATAGCG
LOC_Os07g25460
Os.27476.1.A1_at--510--5271Chr07:14573208..14573232 (25 bp)
GAATGTCAAGAAACAACCGCTTGTC
LOC_Os07g25460
Os.27476.1.A1_at--925--1791Chr07:14573193..14573217 (25 bp)
ACCGCTTGTCTAGTTTCGATGTGAT
LOC_Os07g25460
Os.27476.1.A1_at--580--9351Chr07:14573156..14573180 (25 bp)
TCGCAACATTCTTTCGTTTAACCCA
LOC_Os07g25460
Os.27476.1.A1_at--566--10231Chr07:14573110..14573134 (25 bp)
TATTGCATCGACCTGCAGGTAGTTT
LOC_Os07g25460
Os.27476.1.A1_at--152--5831Chr07:14573080..14573104 (25 bp)
GACCGAGGTGTCTGTTGATAATGCT
LOC_Os07g25460
Os.27476.1.A1_at--140--9771Chr07:14573062..14573086 (25 bp)
TAATGCTGGTGTCGCGGTGTTCTAA
LOC_Os07g25460
Os.27476.1.A1_at--709--7751Chr07:14573047..14573071 (25 bp)
GGTGTTCTAAAGTTATTGCCTGTTT
LOC_Os07g25460
Os.27476.1.A1_at--46--10031NONE
TAGTACCATATTTCTGTATGTTGGG
NONE
Os.27476.1.A1_at--949--7311Chr07:14572949..14572973 (25 bp)
GTGACATGAAGGTGCACACTTAACT
LOC_Os07g25460
Os.27476.1.A1_at--296--10611Chr07:14572895..14572919 (25 bp)
TTCTGTCTTTGCTGGGTGCAGGGAT
LOC_Os07g25460
Target Sequence 
AATGCGGCGGCATAGATAGATAGCGCTGGTGGTGGTTTGAGACAATGTCGTGGATGACNCTGAAATCATTGAAAGGGCAA
TACTTGGTGTGATGATACCTTCTGATCTAACAGGAAGGATGAGTGGGAGATTTGAAGATTTCGACGAGCTGCAGGTGACT
GATGTCGAATGTCAAGAAACAACCGCTTGTCTAGTTTCGATGTGATGAAAAGATTTGTTCGCAACATTCTTTCGTTTAAC
CCAAATCATTTCAATCCCATTTATTATTGCATCGACCTGCAGGTAGTTTTTTTTGACCGAGGTGTCTGTTGATAATGCTG
GTGTCGCGGTGTTCTAAAGTTATTGCCTGTTTTTTTGCATCTTCACCGTGCCAACATCCAAATGCATAGTACCATATTTC
TGTATGTTGGGGTGGCACAAATTTTGTGACATGAAGGTGCACACTTAACTTAAGTAGATCATTGTATGGTAGATTAATTT
TCTGTCTTTGCTGGGTGCAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27476.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis