Browse Element(s) Details


Os.27516.1.A1_at

Description gb:AK060606.1
DB_XREF= gi:32970624
TID=Os.27516.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B10, full insert sequence.
FL= gb:AK060606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2432011/112-oxo acid dehydrogenases acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24290OsAffx.30543.2.S1_x_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24290OsAffx.30543.2.S1_at11/119+14433370..14439385Agenet domain containing protein
LOC_Os09g24300NANA9+14440360..14440806hypothetical protein
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24320Os.27516.1.A1_at11/119+14453727..144564542-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os09g24330NANA9+14462612..14463476protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_x_at11/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_at10/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24350Os.55213.1.S1_at10/119+14472051..14473027expressed protein
LOC_Os09g24359NANA9+14477208..14477505NA
LOC_Os09g24370OsAffx.17872.1.S1_s_at11/119+14478027..14478829expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27516.1.A1_at--139--10571Chr09:14455144..14455168 (25 bp)
TTCTTACGCCTGTCTTGGAGGATGT
LOC_Os09g24320
Os.27516.1.A1_at--20--6631Chr09:14455007..14455031 (25 bp)
GTTGGATGTATACCTTCTTGCACAA
LOC_Os09g24320
Os.27516.1.A1_at--131--5311Chr09:14454962..14454986 (25 bp)
GAAGGCACGCATGAAGCAGCTCCAA
LOC_Os09g24320
Os.27516.1.A1_at--942--4991Chr09:14454947..14454971 (25 bp)
GCAGCTCCAACCAGACGAATACAGT
LOC_Os09g24320
Os.27516.1.A1_at--438--6751Chr09:14454846..14454866 (21 bp)
GTTCAGGGACTTTTACGCTGTCTAA
LOC_Os09g24320
Os.27516.1.A1_at--208--6391Chr09:14454640..14454664 (25 bp)
GATCGAGACCTACTTTGGTGGCCAA
LOC_Os09g24320
Os.27516.1.A1_at--70--3211Chr09:14454021..14454045 (25 bp)
CAATGTTACTGCTGACCACAGGATT
LOC_Os09g24320
Os.27516.1.A1_at--991--5051Chr09:14453978..14454002 (25 bp)
GCAGCATTCCTGCAGACATTTGCGA
LOC_Os09g24320
Os.27516.1.A1_at--272--8131Chr09:14453918..14453942 (25 bp)
GGAAAATGTCCCTCACAAGTGCTCC
LOC_Os09g24320
Os.27516.1.A1_at--605--1131Chr09:14453901..14453925 (25 bp)
AGTGCTCCCTAAGTATCTGCAGTTT
LOC_Os09g24320
Os.27516.1.A1_at--689--9711Chr09:14453855..14453879 (25 bp)
TAATTCCACCGAGCATTTGTAGCCA
LOC_Os09g24320
Target Sequence 
TTCTTACGCCTGTCTTGGAGGATGTTGATAAGTTGGATGTATACCTTCTTGCACAAAAGTGGAGAGGCCTGCTCAAGAAG
GCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGA
TAGATTCGATGCAATCCTTCCACCTGGTCAGGGGGCTATTATGGCTGTTGGAGGATCGAGACCTACTTTGGTGGCCAACA
AAGATGGTTTCTTTAGCATCAAGAACGAAATGCTGGTCAATGTTACTGCTGACCACAGGATTATATATGGTGCTGATTTG
GCAGCATTCCTGCAGACATTTGCGAAGATCATTGAGGATCCTGAGAGCCTAACATTGTAGGGAAAATGTCCCTCACAAGT
GCTCCCTAAGTATCTGCAGTTTGTTTGATTCGAATTGGAAGAATAATTCCACCGAGCATTTGTAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27516.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis