Browse Element(s) Details


Os.27645.1.S1_x_at

Description gb:AK063968.1
DB_XREF= gi:32973986
TID=Os.27645.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B01, full insert sequence.
FL= gb:AK063968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2239011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g223803/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22360Os.26778.1.S1_at11/114+12621227..12626987expressed protein
LOC_Os04g22370NANA4+12632769..12635185hypothetical protein
LOC_Os04g22380Os.49284.1.S1_x_at4/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22380Os.27645.1.S1_x_at3/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22380Os.49284.1.S1_at1/114+12637238..12643654oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.49284.1.S1_x_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.27645.1.S1_x_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22390Os.49284.1.S1_at11/114+12645109..12649208oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g22400NANA4+12660764..12666779retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22410OsAffx.13922.1.S1_at11/114+12669773..12670468hypothetical protein
LOC_Os04g22420NANA4+12672349..12673107retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22430Os.35046.2.S1_x_at1/114+12673522..12676614retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27645.1.S1_x_at--210--2851Chr04:12647470..12647494 (25 bp)
AAGTAACAGTCAACTCTCTGCATCC
LOC_Os04g22390
Os.27645.1.S1_x_at--349--9052Chr04:12647488..12647512 (25 bp)
TGCATCCTGGAGCTGTTGTCACCAA
LOC_Os04g22390
Os.27645.1.S1_x_at--920--6631Chr04:12647502..12647526 (25 bp)
GTTGTCACCAACATTATGCGTCACT
LOC_Os04g22390
Os.27645.1.S1_x_at--782--591Chr04:12647517..12647541 (25 bp)
ATGCGTCACTGGTATTTCGTAAATG
LOC_Os04g22390
Os.27645.1.S1_x_at--661--7312Chr04:12648765..12648789 (25 bp)
GTGCTATGTGGCATTGCATCCTCAG
LOC_Os04g22390
Os.27645.1.S1_x_at--1016--4972Chr04:12648780..12648804 (25 bp)
GCATCCTCAGGTTGCTGGAGTCACT
LOC_Os04g22390
Os.27645.1.S1_x_at--339--5212Chr04:12648835..12648859 (25 bp)
GAATTAAAATCTCATGCGCTCGACA
LOC_Os04g22390
Os.27645.1.S1_x_at--385--9351Chr04:12648854..12648878 (25 bp)
TCGACATGGGCCTCGCCAAAAGATT
LOC_Os04g22390
Os.27645.1.S1_x_at--842--8651Chr04:12648878..12648902 (25 bp)
TGTGGGATTTCAGTCTCAACCTAAT
LOC_Os04g22390
Os.27645.1.S1_x_at--368--4531Chr04:12649099..12649123 (25 bp)
GCCCGAACCAGCCACATTTGTAAAG
LOC_Os04g22390
Os.27645.1.S1_x_at--1120--731Chr04:12649156..12649180 (25 bp)
ATGTTTGTACTTCTTCACAGCGTTT
LOC_Os04g22390
Target Sequence 
AAGTAACAGTCAACTCTCTGCATCCTGGAGCTGTTGTCACCAACATTATGCGTCACTGGTATTTCGTAAATGGTATGCTA
TCTACACTTGGTAAATTTTTCGTTAAAGGTGTTGAACANGGTGCAGCCACAGTGTGCTATGTGGCATTGCATCCTCAGGT
TGCTGGAGTCACTGGCAAATACTTTGTTGACTGCAATGTCACTGAATTAAAATCTCATGCGCTCGACATGGGCCTCGCCA
AAAGATTGTGGGATTTCAGTCTCAACCTAATCCATTAGTAGAAACTGTTGCAAGTGGTGTGTAAAGCCTATTTTTTGGAA
ACGAACTGAATCAAGTTAGGGCACTGAAGTGNGTGAAGAACATGATAAAAGTATTTCTACAAAAATTGCGAATGGAGGAC
ATGTTGTTAATAGATGTGAAATTTATCCAGTTGTTCGGTAGGTGTGATATCAAACTGCTGGAAGACAGCCCGAACCAGCC
ACATTTGTAAAGCTTGNATNNATTGATTGGATGTACTTCTTCATATGTTTGTACTTCTTCACAGCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27645.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis