Browse Element(s) Details


Os.27679.1.A1_at

Description gb:AK068423.1
DB_XREF= gi:32978441
TID=Os.27679.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153L01, full insert sequence.
FL= gb:AK068423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed
LOC_Os02g42960Os.27679.1.A1_at11/112+25849743..25853160expressed protein
LOC_Os02g42970OsAffx.12466.1.S1_at11/112+25853635..25855114No apical meristem protein
LOC_Os02g42980NANA2+25866512..25866909transposon protein, putative, unclassified
LOC_Os02g42990OsAffx.24695.1.S1_at11/112+25873125..25873697Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27679.1.A1_at--282--6111Chr02:25851532..25851556 (25 bp)
GAGTGATACCTTGATGGATCGCATG
LOC_Os02g42960
Os.27679.1.A1_at--52--6391Chr02:25851548..25851963 (25 bp)
GATCGCATGGTGCTCAATGAAGCTA
LOC_Os02g42960
Os.27679.1.A1_at--76--3031Chr02:25851972..25851996 (25 bp)
AATGCTGTGCTTGTACGGTCAGTCC
LOC_Os02g42960
Os.27679.1.A1_at--702--10471Chr02:25851997..25852021 (25 bp)
TTACGCGTAGCGATCTTGGTGGAGC
LOC_Os02g42960
Os.27679.1.A1_at--1024--7391Chr02:25852045..25852069 (25 bp)
GTGATGCTGTTATTGACCTGACACA
LOC_Os02g42960
Os.27679.1.A1_at--1012--2351Chr02:25852796..25852820 (25 bp)
AAAGCCTTGGATGCGGCAACAGTCG
LOC_Os02g42960
Os.27679.1.A1_at--680--4511Chr02:25852820..25852844 (25 bp)
GCCGAAATGCATATGGGAGCCCTTC
LOC_Os02g42960
Os.27679.1.A1_at--70--8111Chr02:25852881..25852905 (25 bp)
GGACCGTGATGGTTTCTGCGATGAA
LOC_Os02g42960
Os.27679.1.A1_at--641--2731Chr02:25852904..25852928 (25 bp)
AAGCAACTGGTATGTGTGACGCAAA
LOC_Os02g42960
Os.27679.1.A1_at--153--2351Chr02:25853007..25853031 (25 bp)
AAAGCAGATCGGTTCAGGATTCAGA
LOC_Os02g42960
Os.27679.1.A1_at--1049--7431Chr02:25853105..25853129 (25 bp)
GTGTACTGAACGACTGATGCCGTAT
LOC_Os02g42960
Target Sequence 
GAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGC
GTAGCGATCTTGGTGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTG
TGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGTCGCCGAAA
TGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAG
CAACTGGTATGTGTGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGTATATACA
TTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGTTCTCGTTTTGCGAATGTTGTAGCATTG
CAGAGAGATCAGGTAAACTAGGACTGTAGACAAGTTATGTGTACTGAACGACTGATGCCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27679.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis