Browse Element(s) Details


Os.54793.1.S1_at

Description gb:AK106784.1
DB_XREF= gi:32991993
TID=Os.54793.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H10, full insert sequence.
FL= gb:AK106784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4295011/11yabby15 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed
LOC_Os02g42960Os.27679.1.A1_at11/112+25849743..25853160expressed protein
LOC_Os02g42970OsAffx.12466.1.S1_at11/112+25853635..25855114No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54793.1.S1_at--89--3391Chr02:25834410..25834732 (25 bp)
CAGCCGCAAAGAATTGGGCCCATTT
LOC_Os02g42950
Os.54793.1.S1_at--346--5371Chr02:25834142..25834367 (25 bp)
GAAGACCTTCAAGCCTCAGGATGGT
LOC_Os02g42950
Os.54793.1.S1_at--1065--5671Chr02:25834111..25834135 (25 bp)
GACATTCTTCTCAAGGATAGCCTGT
LOC_Os02g42950
Os.54793.1.S1_at--171--1011Chr02:25834098..25834122 (25 bp)
AGGATAGCCTGTATGCTGCGGCAGC
LOC_Os02g42950
Os.54793.1.S1_at--341--2391Chr02:25834052..25834076 (25 bp)
AAACATGGGCGTCACTCCGTTCTAG
LOC_Os02g42950
Os.54793.1.S1_at--595--9291Chr02:25834037..25834061 (25 bp)
TCCGTTCTAGCGAGCTTTGGCAAAG
LOC_Os02g42950
Os.54793.1.S1_at--152--1771Chr02:25834001..25834025 (25 bp)
ACCGAATTCTTGGTGGTGGCCCTAG
LOC_Os02g42950
Os.54793.1.S1_at--451--10651Chr02:25833811..25833835 (25 bp)
TTCCTCGTAGAGACTTTTTTCCCTG
LOC_Os02g42950
Os.54793.1.S1_at--208--10411Chr02:25833744..25833768 (25 bp)
TTCTTTCAGGACTATCTTCGTACTC
LOC_Os02g42950
Os.54793.1.S1_at--268--5971Chr02:25833698..25833722 (25 bp)
GAGAAGTTGCTGTTCCGTTGCCTGA
LOC_Os02g42950
Os.54793.1.S1_at--946--4011Chr02:25833683..25833707 (25 bp)
CGTTGCCTGATTGTGTCCCAAAAGA
LOC_Os02g42950
Target Sequence 
CAGCCGCAAAGAATTGGGCCCATTTCCCTCACATCCATTTTGGCCTCATGCCGGATCAGGGGTTCAAGAAGACCTTCAAG
CCTCAGGATGGTTCTGAAGACATTCTTCTCAAGGATAGCCTGTATGCTGCGGCAGCCGCCGCCGCCGCTGCAGCCGCAAA
CATGGGCGTCACTCCGTTCTAGCGAGCTTTGGCAAAGCGGCCGCAAGCACCGAATTCTTGGTGGTGGCCCTAGCTCGCTC
TCATGTGTGGCGCCATTCTAGCTATATAGCAAGGGTTTAATTAGCATCAGATCATCATCTCTTAATATCATGTGTGTTGC
TTAATTAGAGTACTTCTGAGTGTGTAGAAGAGAGATGGGGAATCCTGTTGAGTGCCTAGGTTTATGCTTATAACCATATT
CCTCGTAGAGACTTTTTTCCCTGTTTTTCTCTTTTCTTTTCCTTCTTTATTTTTTTATCCTTTCTTTCTTTCAGGACTAT
CTTCGTACTCCCTATTCACCTGTAGAGTGTAGAGAAGTTGCTGTTCCGTTGCCTGATTGTGTCCCAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis