Browse Element(s) Details


OsAffx.2946.1.S1_at

Description tigr:9630.m04117
TID=OsAffx.2946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4293011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2946.1.S1_at--497--3711Chr02:25818142..25818166 (25 bp)
CTACCGGAGGGCTATCCGAGCTACT
LOC_Os02g42930
OsAffx.2946.1.S1_at--781--1771Chr02:25818140..25818164 (25 bp)
ACCGGAGGGCTATCCGAGCTACTGT
LOC_Os02g42930
OsAffx.2946.1.S1_at--174--6131Chr02:25818136..25818160 (25 bp)
GAGGGCTATCCGAGCTACTGTGCGA
LOC_Os02g42930
OsAffx.2946.1.S1_at--150--1091Chr02:25818135..25818159 (25 bp)
AGGGCTATCCGAGCTACTGTGCGAG
LOC_Os02g42930
OsAffx.2946.1.S1_at--419--8311Chr02:25818133..25818157 (25 bp)
GGCTATCCGAGCTACTGTGCGAGCT
LOC_Os02g42930
OsAffx.2946.1.S1_at--407--4871Chr02:25818132..25818156 (25 bp)
GCTATCCGAGCTACTGTGCGAGCTA
LOC_Os02g42930
OsAffx.2946.1.S1_at--1064--10131Chr02:25818130..25818154 (25 bp)
TATCCGAGCTACTGTGCGAGCTATA
LOC_Os02g42930
OsAffx.2946.1.S1_at--95--551Chr02:25818129..25818153 (25 bp)
ATCCGAGCTACTGTGCGAGCTATAG
LOC_Os02g42930
OsAffx.2946.1.S1_at--517--4231Chr02:25818127..25818151 (25 bp)
CCGAGCTACTGTGCGAGCTATAGGA
LOC_Os02g42930
OsAffx.2946.1.S1_at--486--4851Chr02:25818123..25818147 (25 bp)
GCTACTGTGCGAGCTATAGGAGGGA
LOC_Os02g42930
OsAffx.2946.1.S1_at--281--8351Chr02:25817904..25817928 (25 bp)
GGCGGCAATGGTGCGGCATGCAGAG
LOC_Os02g42930
Target Sequence 
CTACCGGAGGGCTATCCGAGCTACTGTGCGAGCTATAGGAGGGAGAGGGTGAGCGAGGAAGAGGAACGGAGGGCTACCGC
GTCGGGACAGGGCGCCGTGACGAGCGGCGGCGGCGCGGGAGAGCTCTCCGGCCTCGGGCCGGGGAAGGGGAAGAAGGGAT
GGCGCCCGGAGTCCTCTTCCGCTCCCCGCGCGCACGCCGGCTTCACCAGCACGCGCGACGGCGACGACGAGAGGTCAAGG
CGGCAATGGTGCGGCATGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis