Browse Element(s) Details


OsAffx.12465.1.S1_at

Description tigr:9630.m04115
TID=OsAffx.12465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4291011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12465.1.S1_at--562--10031Chr02:25800730..25800754 (25 bp)
TAGAGACACTCCTTCGAGGGACCAG
LOC_Os02g42910
OsAffx.12465.1.S1_at--865--5871Chr02:25800706..25800730 (25 bp)
GAGCCCTTCAATTGGGACTCAGCAT
LOC_Os02g42910
OsAffx.12465.1.S1_at--980--11Chr02:25800594..25800618 (25 bp)
ATAGAACCGTCCATTGATCCAACAT
LOC_Os02g42910
OsAffx.12465.1.S1_at--423--4351Chr02:25800400..25800424 (25 bp)
CCAGAACAGCCCTGGTGTTGGGTGT
LOC_Os02g42910
OsAffx.12465.1.S1_at--362--411Chr02:25800336..25800360 (25 bp)
ATCATGTCAGGTCAGATAAGCTCCC
LOC_Os02g42910
OsAffx.12465.1.S1_at--611--4271Chr02:25800313..25800337 (25 bp)
CCTGTGCCCTATCCTCAAATAGATT
LOC_Os02g42910
OsAffx.12465.1.S1_at--162--10531Chr02:25800266..25800290 (25 bp)
TTCATGTCAGGTCAGATAAGCTCCC
LOC_Os02g42910
OsAffx.12465.1.S1_at--561--3871Chr02:25800242..25800266 (25 bp)
CTGTCCCTGTATCCTCAAATTTAAG
LOC_Os02g42910
OsAffx.12465.1.S1_at--887--6531Chr02:25800147..25800171 (25 bp)
GATTTACACCTAAAAGCCGCTCATG
LOC_Os02g42910
OsAffx.12465.1.S1_at--900--4511Chr02:25800132..25800156 (25 bp)
GCCGCTCATGCATTCAAAAGCACTG
LOC_Os02g42910
OsAffx.12465.1.S1_at--440--2351Chr02:25800116..25800140 (25 bp)
AAAGCACTGGCGGTATAGGTTAAAT
LOC_Os02g42910
Target Sequence 
TAGAGACACTCCTTCGAGGGACCAGAGCCCTTCAATTGGGACTCAGCATTATGGGAAAGGCAAGGAAGGAGCTAAAGCAC
AGAATCGCAGAGCAAGGAAAGATTTCAATGTACAACCAACAAGTCACAAAAAGAGGATAGAACCGTCCATTGATCCAACA
TGGACTCCTATTGACAAGAGAGCAAGACAGAAACTTTCATTTGTTACATATGGGAAGGAAAAACAGAGCAAGCTGGTCTG
GCGAAACCAGAACAGCCCTGGTGTTGGGTGTGGCTTCCGGAAAAGATTCCGAGAGGAAGGTACGTAGATTATCATGTCAG
GTCAGATAAGCTCCCTGTGCCCTATCCTCAAATAGATTTCGAGAGGAAAGTACGTAGATTTTCATGTCAGGTCAGATAAG
CTCCCTGTCCCTGTATCCTCAAATTTAAGTTGCTGGTGTTTTATTTTGTAAAGATATTCCATGAAGATATGTCTAAACTC
TTAACTTACGTAAAGAAGTGATTTACACCTAAAAGCCGCTCATGCATTCAAAAGCACTGGCGGTATAGGTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis